Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   GRT08_RS16930 Genome accession   NZ_CP047234
Coordinates   3434585..3435274 (-) Length   229 a.a.
NCBI ID   WP_198863951.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain FJ4     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3429585..3440274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GRT08_RS16895 (GRT08_16670) fliW 3429675..3430106 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  GRT08_RS16900 (GRT08_16675) - 3430136..3430705 (-) 570 WP_007407476.1 DUF6470 family protein -
  GRT08_RS16905 (GRT08_16680) flgL 3430797..3431714 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  GRT08_RS16910 (GRT08_16685) flgK 3431726..3433243 (-) 1518 WP_015387629.1 flagellar hook-associated protein FlgK -
  GRT08_RS16915 (GRT08_16690) - 3433259..3433741 (-) 483 WP_003151394.1 flagellar protein FlgN -
  GRT08_RS16920 (GRT08_16695) flgM 3433756..3434022 (-) 267 WP_377802865.1 flagellar biosynthesis anti-sigma factor FlgM -
  GRT08_RS16925 (GRT08_16700) - 3434092..3434511 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  GRT08_RS16930 (GRT08_16705) comFC 3434585..3435274 (-) 690 WP_198863951.1 phosphoribosyltransferase family protein Machinery gene
  GRT08_RS16935 (GRT08_16710) - 3435280..3435564 (-) 285 WP_017418816.1 late competence development ComFB family protein -
  GRT08_RS16940 (GRT08_16715) comFA 3435622..3437007 (-) 1386 WP_128574993.1 DEAD/DEAH box helicase Machinery gene
  GRT08_RS16945 (GRT08_16720) - 3437115..3437963 (-) 849 WP_003151387.1 DegV family protein -
  GRT08_RS16950 (GRT08_16725) degU 3438061..3438750 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  GRT08_RS16955 (GRT08_16730) degS 3438827..3439990 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25331.07 Da        Isoelectric Point: 8.6779

>NTDB_id=411711 GRT08_RS16930 WP_198863951.1 3434585..3435274(-) (comFC) [Bacillus amyloliquefaciens strain FJ4]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEGPVCSICGRPQESNEKCADCAARKSKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=411711 GRT08_RS16930 WP_198863951.1 3434585..3435274(-) (comFC) [Bacillus amyloliquefaciens strain FJ4]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTTTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGCAGCAGCCGATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGAAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATCTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.793

99.127

0.603

Multiple sequence alignment