Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   GRT08_RS16950 Genome accession   NZ_CP047234
Coordinates   3438061..3438750 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus amyloliquefaciens strain FJ4     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3433061..3443750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GRT08_RS16915 (GRT08_16690) - 3433259..3433741 (-) 483 WP_003151394.1 flagellar protein FlgN -
  GRT08_RS16920 (GRT08_16695) flgM 3433756..3434022 (-) 267 WP_377802865.1 flagellar biosynthesis anti-sigma factor FlgM -
  GRT08_RS16925 (GRT08_16700) - 3434092..3434511 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  GRT08_RS16930 (GRT08_16705) comFC 3434585..3435274 (-) 690 WP_198863951.1 phosphoribosyltransferase family protein Machinery gene
  GRT08_RS16935 (GRT08_16710) - 3435280..3435564 (-) 285 WP_017418816.1 late competence development ComFB family protein -
  GRT08_RS16940 (GRT08_16715) comFA 3435622..3437007 (-) 1386 WP_128574993.1 DEAD/DEAH box helicase Machinery gene
  GRT08_RS16945 (GRT08_16720) - 3437115..3437963 (-) 849 WP_003151387.1 DegV family protein -
  GRT08_RS16950 (GRT08_16725) degU 3438061..3438750 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  GRT08_RS16955 (GRT08_16730) degS 3438827..3439990 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  GRT08_RS16960 (GRT08_16735) - 3440213..3440860 (+) 648 WP_003151384.1 YigZ family protein -
  GRT08_RS16965 (GRT08_16740) - 3440865..3442079 (+) 1215 WP_070082459.1 LCP family protein -
  GRT08_RS16970 (GRT08_16745) - 3442169..3443245 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=411713 GRT08_RS16950 WP_003219701.1 3438061..3438750(-) (degU) [Bacillus amyloliquefaciens strain FJ4]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=411713 GRT08_RS16950 WP_003219701.1 3438061..3438750(-) (degU) [Bacillus amyloliquefaciens strain FJ4]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACTGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment