Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GRI33_RS04430 Genome accession   NZ_CP047232
Coordinates   932732..933241 (+) Length   169 a.a.
NCBI ID   WP_009364346.1    Uniprot ID   -
Organism   Brucella sp. BO3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 927732..938241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GRI33_RS04415 (GRI33_04420) - 928448..928723 (+) 276 WP_008505319.1 HU family DNA-binding protein -
  GRI33_RS04420 (GRI33_04425) uvrA 928908..931832 (-) 2925 WP_069715151.1 excinuclease ABC subunit UvrA -
  GRI33_RS04425 (GRI33_04430) - 931946..932164 (-) 219 WP_008935845.1 hypothetical protein -
  GRI33_RS04430 (GRI33_04435) ssb 932732..933241 (+) 510 WP_009364346.1 single-stranded DNA-binding protein Machinery gene
  GRI33_RS04435 (GRI33_04440) phnF 933361..934122 (-) 762 WP_069715150.1 phosphonate metabolism transcriptional regulator PhnF -
  GRI33_RS04440 (GRI33_04445) phnN 934309..934887 (+) 579 WP_069715149.1 phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN -
  GRI33_RS04445 (GRI33_04450) - 934978..935607 (-) 630 WP_006070834.1 MarC family protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18428.21 Da        Isoelectric Point: 5.3476

>NTDB_id=411641 GRI33_RS04430 WP_009364346.1 932732..933241(+) (ssb) [Brucella sp. BO3]
MAGSVNKVILVGNLGADPEIRRLNSGDMVANLRIATSESWRDRQTGERKDRTEWHSVVIFNENLAKVAEQYLKKGAKVYI
EGALQTRKWQDQNGNDRYSTEIVLQKFRGELQMLDSRSEGGEGRSFGGGGNRNQMSDYSGGGGDFGSSGPSSGGSSGGFS
RDLDDEIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=411641 GRI33_RS04430 WP_009364346.1 932732..933241(+) (ssb) [Brucella sp. BO3]
ATGGCTGGTAGCGTCAACAAGGTCATTCTGGTCGGCAATCTTGGTGCAGATCCTGAAATTCGCCGCCTGAATTCCGGCGA
TATGGTTGCCAACCTGCGCATTGCAACCTCGGAAAGCTGGCGTGACCGCCAGACCGGCGAACGCAAGGACCGCACCGAAT
GGCACAGCGTCGTCATCTTCAATGAAAATCTCGCCAAGGTTGCCGAACAATATCTGAAGAAGGGCGCCAAGGTTTATATC
GAAGGCGCGCTCCAGACCCGCAAGTGGCAGGATCAGAACGGCAATGACCGTTATTCAACGGAAATCGTGCTGCAAAAATT
CCGTGGAGAGCTTCAGATGCTCGACAGCCGCAGCGAAGGCGGCGAGGGCCGTTCCTTCGGCGGTGGCGGCAACCGCAACC
AGATGTCGGATTATTCCGGCGGCGGTGGAGATTTCGGCTCATCCGGCCCATCTTCGGGCGGCAGCAGCGGCGGTTTCTCG
CGCGATCTGGACGATGAAATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.421

100

0.544
  ssb Vibrio cholerae strain A1552

48.555

100

0.497
  ssb Neisseria meningitidis MC58

39.106

100

0.414
  ssb Neisseria gonorrhoeae MS11

37.989

100

0.402

Multiple sequence alignment