Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   VAA_RS13575 Genome accession   NC_015633
Coordinates   2967612..2968145 (-) Length   177 a.a.
NCBI ID   WP_013857892.1    Uniprot ID   A0AAW8GW50
Organism   Vibrio anguillarum 775     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2962612..2973145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VAA_RS13555 (VAA_01734) - 2963082..2963408 (-) 327 WP_013857888.1 MSHA biogenesis protein MshK -
  VAA_RS13560 (VAA_01735) gspM 2963398..2964042 (-) 645 WP_013857889.1 type II secretion system protein GspM -
  VAA_RS13565 (VAA_01737) - 2964039..2965481 (-) 1443 WP_013857890.1 hypothetical protein -
  VAA_RS13570 (VAA_01738) csrD 2965494..2967482 (-) 1989 WP_029189909.1 RNase E specificity factor CsrD -
  VAA_RS13575 (VAA_01739) ssb 2967612..2968145 (-) 534 WP_013857892.1 single-stranded DNA-binding protein Machinery gene
  VAA_RS13580 (VAA_01740) qstR 2968431..2969078 (+) 648 WP_026027842.1 LuxR C-terminal-related transcriptional regulator Regulator
  VAA_RS13585 (VAA_01741) galU 2969196..2970065 (+) 870 WP_013857894.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  VAA_RS13590 (VAA_01742) uvrA 2970234..2973056 (+) 2823 WP_026029161.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19459.61 Da        Isoelectric Point: 5.2257

>NTDB_id=41160 VAA_RS13575 WP_013857892.1 2967612..2968145(-) (ssb) [Vibrio anguillarum 775]
MASRGVNKVILVGNLGNDPEIRYMPGGAAVANITIATSDSWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMPQQQQQGGGWGQPQQPAMQKQPQQQQSAPQQA
QPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=41160 VAA_RS13575 WP_013857892.1 2967612..2968145(-) (ssb) [Vibrio anguillarum 775]
ATGGCAAGCCGTGGAGTAAATAAAGTTATTTTAGTGGGTAACCTAGGTAACGACCCAGAAATTCGTTATATGCCTGGTGG
CGCTGCTGTGGCAAATATCACCATTGCAACGTCAGATTCATGGCGTGATAAAGCAACTGGCGAGCAACGCGAAAAAACCG
AATGGCACCGTGTTGCGCTGTTTGGCAAATTAGCCGAAGTGGCTGGTGAATACTTACGTAAAGGTTCACAAGTGTACATT
GAAGGTCAGCTACAAACTCGTAAGTGGCAAGATCAAAGTGGACAAGATCGTTATACCACCGAAGTTGTCGTACAAGGGTT
TAATGGTGTGATGCAAATGTTGGGTGGCCGTGCTCAAGGTGGTGCTCCAGCGCAAGGTGGAATGCCACAACAACAGCAAC
AAGGTGGCGGATGGGGGCAACCTCAGCAGCCTGCGATGCAAAAGCAACCACAGCAACAGCAGTCAGCTCCTCAACAGGCT
CAACCTCAGTATAATGAACCACCAATGGATTTTGATGACGACATCCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

84.916

100

0.859
  ssb Glaesserella parasuis strain SC1401

54.974

100

0.593
  ssb Neisseria meningitidis MC58

43.889

100

0.446
  ssb Neisseria gonorrhoeae MS11

43.889

100

0.446

Multiple sequence alignment