Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   GR342_RS03400 Genome accession   NZ_CP047216
Coordinates   664923..665369 (+) Length   148 a.a.
NCBI ID   WP_002776437.1    Uniprot ID   A0A0Q2LSM9
Organism   Campylobacter coli strain SH89     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 659923..670369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GR342_RS03380 (GR342_03355) - 660875..662299 (+) 1425 WP_002776421.1 anaerobic C4-dicarboxylate transporter -
  GR342_RS03385 (GR342_03360) uvrB 662334..664307 (-) 1974 WP_002776424.1 excinuclease ABC subunit UvrB -
  GR342_RS03390 (GR342_03365) - 664461..664691 (+) 231 WP_002776426.1 hypothetical protein -
  GR342_RS03395 (GR342_03370) - 664681..664926 (+) 246 WP_002776428.1 hypothetical protein -
  GR342_RS03400 (GR342_03375) Cj0683 664923..665369 (+) 447 WP_002776437.1 type II secretion system protein Machinery gene
  GR342_RS03405 (GR342_03380) - 665366..667204 (+) 1839 WP_250414701.1 primosomal protein N' -
  GR342_RS03410 (GR342_03385) - 667188..667958 (-) 771 WP_052793311.1 phosphocholine cytidylyltransferase family protein -
  GR342_RS03415 (GR342_03390) - 667955..668563 (-) 609 WP_002815137.1 gamma-glutamyl-CDP-amidate hydrolase -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17302.19 Da        Isoelectric Point: 8.4538

>NTDB_id=411563 GR342_RS03400 WP_002776437.1 664923..665369(+) (Cj0683) [Campylobacter coli strain SH89]
MKKAFTLLELVFVILILGILASLSFSFANQNKNDAKLLKLKIDYEMLNSALSLMRTQVELKQISSFSPNLDEAKINTQKE
KLFYCQTSQNCTYSLLHTPIYSSFNAWMKTAPNRYRFFLNTKEWVDFFYNADFAILECLSEKYCKELL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=411563 GR342_RS03400 WP_002776437.1 664923..665369(+) (Cj0683) [Campylobacter coli strain SH89]
ATGAAAAAGGCTTTTACTCTCTTAGAGCTTGTTTTTGTGATATTGATTTTGGGGATATTGGCAAGTTTAAGCTTCTCCTT
TGCCAATCAAAATAAAAACGATGCGAAACTATTAAAATTGAAAATAGATTATGAAATGCTAAATTCAGCCCTATCCCTTA
TGCGTACTCAAGTTGAACTCAAACAAATCAGTTCTTTTTCCCCTAATCTTGATGAAGCAAAAATCAACACTCAAAAAGAA
AAACTTTTTTACTGCCAAACTAGTCAAAATTGCACCTATTCTTTGCTTCATACACCTATTTATTCTAGTTTTAATGCTTG
GATGAAAACAGCACCCAATCGATATAGATTTTTTTTAAATACAAAAGAATGGGTTGATTTTTTTTATAATGCTGATTTTG
CTATTTTAGAATGTTTGAGTGAAAAATATTGTAAAGAATTATTATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q2LSM9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.108

100

0.581

Multiple sequence alignment