Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | D1605_RS08455 | Genome accession | NZ_CP047171 |
| Coordinates | 1866312..1866758 (+) | Length | 148 a.a. |
| NCBI ID | WP_004088866.1 | Uniprot ID | Q87B55 |
| Organism | Xylella fastidiosa subsp. fastidiosa strain IVIA5235 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
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Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1858959..1880109 | 1866312..1866758 | within | 0 |
Gene organization within MGE regions
Location: 1858959..1880109
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D1605_RS08410 (D1605_008525) | - | 1858959..1859474 (-) | 516 | WP_004088839.1 | phage portal protein | - |
| D1605_RS11825 (D1605_008530) | - | 1859471..1859707 (-) | 237 | WP_004088842.1 | hypothetical protein | - |
| D1605_RS08420 (D1605_008535) | - | 1859784..1861883 (-) | 2100 | WP_004088845.1 | phage terminase large subunit family protein | - |
| D1605_RS08425 (D1605_008540) | - | 1861880..1862488 (-) | 609 | WP_004088848.1 | hypothetical protein | - |
| D1605_RS08430 (D1605_008545) | - | 1862885..1864354 (-) | 1470 | WP_004088851.1 | VapE domain-containing protein | - |
| D1605_RS08435 (D1605_008550) | - | 1864351..1865406 (-) | 1056 | WP_004088854.1 | DNA primase | - |
| D1605_RS08440 (D1605_008555) | - | 1865405..1865806 (+) | 402 | WP_004088857.1 | hypothetical protein | - |
| D1605_RS08445 (D1605_008560) | - | 1865908..1866081 (-) | 174 | WP_155115078.1 | hypothetical protein | - |
| D1605_RS08450 (D1605_008565) | - | 1866056..1866328 (+) | 273 | WP_004088863.1 | DUF5131 family protein | - |
| D1605_RS08455 (D1605_008570) | ssb | 1866312..1866758 (+) | 447 | WP_004088866.1 | single-stranded DNA-binding protein | Machinery gene |
| D1605_RS08460 (D1605_008575) | - | 1866777..1867052 (+) | 276 | WP_011098179.1 | hypothetical protein | - |
| D1605_RS08465 (D1605_008580) | - | 1867052..1868225 (+) | 1174 | Protein_1671 | integrase | - |
| D1605_RS08470 (D1605_008585) | - | 1868535..1868738 (+) | 204 | WP_004089756.1 | DUF4102 domain-containing protein | - |
| D1605_RS08475 (D1605_008590) | - | 1868805..1869212 (+) | 408 | WP_012382712.1 | hypothetical protein | - |
| D1605_RS11830 | - | 1869413..1869538 (-) | 126 | WP_256626233.1 | hypothetical protein | - |
| D1605_RS08480 (D1605_008595) | - | 1869692..1871146 (-) | 1455 | WP_004089759.1 | class I SAM-dependent methyltransferase | - |
| D1605_RS08485 (D1605_008600) | - | 1871143..1871805 (-) | 663 | WP_011098180.1 | hypothetical protein | - |
| D1605_RS08490 (D1605_008605) | - | 1871907..1872116 (+) | 210 | WP_126709098.1 | hypothetical protein | - |
| D1605_RS08500 (D1605_008615) | - | 1872350..1872805 (-) | 456 | WP_012382713.1 | type IV pilin protein | - |
| D1605_RS08505 (D1605_008620) | - | 1872802..1877367 (-) | 4566 | WP_004089764.1 | pilus assembly protein | - |
| D1605_RS08510 (D1605_008625) | - | 1877371..1877865 (-) | 495 | WP_012382714.1 | PilX N-terminal domain-containing pilus assembly protein | - |
| D1605_RS08515 (D1605_008630) | - | 1877865..1879121 (-) | 1257 | WP_004089768.1 | PilW family protein | - |
| D1605_RS08520 (D1605_008635) | pilV | 1879118..1879600 (-) | 483 | WP_004083567.1 | type IV pilus modification protein PilV | - |
| D1605_RS08525 (D1605_008640) | - | 1879597..1880109 (-) | 513 | WP_004089770.1 | Tfp pilus assembly protein FimT/FimU | - |
Sequence
Protein
Download Length: 148 a.a. Molecular weight: 16607.50 Da Isoelectric Point: 7.3545
>NTDB_id=411289 D1605_RS08455 WP_004088866.1 1866312..1866758(+) (ssb) [Xylella fastidiosa subsp. fastidiosa strain IVIA5235]
MARGINKVILVGNLGNEPDIKYTQSGMTITSISLATSSKRKDREGNTQERTEWHRVKFFGKLGEIAAEYLHKGSQCYIEG
TIRYDKFTGNDGQDRYVTEIIADQMHMLGGRGEGSSGITPQRRPAKVRNNDKAYAYAGDDFHDDDIPF
MARGINKVILVGNLGNEPDIKYTQSGMTITSISLATSSKRKDREGNTQERTEWHRVKFFGKLGEIAAEYLHKGSQCYIEG
TIRYDKFTGNDGQDRYVTEIIADQMHMLGGRGEGSSGITPQRRPAKVRNNDKAYAYAGDDFHDDDIPF
Nucleotide
Download Length: 447 bp
>NTDB_id=411289 D1605_RS08455 WP_004088866.1 1866312..1866758(+) (ssb) [Xylella fastidiosa subsp. fastidiosa strain IVIA5235]
ATGGCACGCGGAATTAACAAGGTGATCCTAGTCGGAAACCTGGGAAACGAGCCAGATATTAAATACACCCAAAGCGGCAT
GACGATCACCAGTATTAGCCTAGCGACCAGCAGCAAACGCAAGGACAGAGAGGGCAATACCCAGGAGCGGACCGAATGGC
ACCGCGTCAAGTTTTTCGGAAAGCTGGGCGAGATTGCCGCTGAATATCTGCACAAGGGATCGCAGTGCTACATAGAGGGC
ACCATCCGTTACGACAAATTCACCGGCAATGATGGGCAGGACCGTTATGTCACTGAGATTATTGCTGACCAAATGCACAT
GCTCGGCGGTCGCGGCGAAGGCTCCAGCGGCATCACGCCACAGCGACGACCGGCAAAGGTCCGTAACAACGATAAAGCCT
ATGCGTATGCAGGCGACGACTTCCACGATGACGACATCCCGTTCTAG
ATGGCACGCGGAATTAACAAGGTGATCCTAGTCGGAAACCTGGGAAACGAGCCAGATATTAAATACACCCAAAGCGGCAT
GACGATCACCAGTATTAGCCTAGCGACCAGCAGCAAACGCAAGGACAGAGAGGGCAATACCCAGGAGCGGACCGAATGGC
ACCGCGTCAAGTTTTTCGGAAAGCTGGGCGAGATTGCCGCTGAATATCTGCACAAGGGATCGCAGTGCTACATAGAGGGC
ACCATCCGTTACGACAAATTCACCGGCAATGATGGGCAGGACCGTTATGTCACTGAGATTATTGCTGACCAAATGCACAT
GCTCGGCGGTCGCGGCGAAGGCTCCAGCGGCATCACGCCACAGCGACGACCGGCAAAGGTCCGTAACAACGATAAAGCCT
ATGCGTATGCAGGCGACGACTTCCACGATGACGACATCCCGTTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
40.909 |
100 |
0.486 |
| ssb | Neisseria meningitidis MC58 |
38.15 |
100 |
0.446 |
| ssb | Neisseria gonorrhoeae MS11 |
38.15 |
100 |
0.446 |
| ssb | Glaesserella parasuis strain SC1401 |
42.029 |
93.243 |
0.392 |