Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GRF56_RS21160 Genome accession   NZ_CP047155
Coordinates   4596559..4597146 (+) Length   195 a.a.
NCBI ID   WP_159144428.1    Uniprot ID   -
Organism   Aeromonas veronii strain AVNIH1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4591559..4602146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GRF56_RS21130 (GRF56_21130) - 4591588..4593039 (-) 1452 WP_111901630.1 curlin -
  GRF56_RS21135 (GRF56_21135) - 4593074..4593595 (-) 522 WP_111901629.1 curlin -
  GRF56_RS21140 (GRF56_21140) - 4593782..4594621 (-) 840 WP_159144427.1 CsgG/HfaB family protein -
  GRF56_RS21145 (GRF56_21145) - 4594629..4595030 (-) 402 WP_019445195.1 curli assembly protein CsgF -
  GRF56_RS21150 (GRF56_21150) - 4595042..4595485 (-) 444 WP_005355005.1 curli production assembly/transport protein CsgE -
  GRF56_RS21155 (GRF56_21155) - 4595485..4596132 (-) 648 WP_042080923.1 LuxR C-terminal-related transcriptional regulator -
  GRF56_RS21160 (GRF56_21160) ssb 4596559..4597146 (+) 588 WP_159144428.1 single-stranded DNA-binding protein Machinery gene
  GRF56_RS21165 (GRF56_21165) - 4597295..4598038 (+) 744 WP_111899864.1 substrate-binding periplasmic protein -
  GRF56_RS22525 (GRF56_21170) - 4598111..4598236 (-) 126 WP_019445191.1 hypothetical protein -
  GRF56_RS21175 (GRF56_21175) - 4598697..4599599 (+) 903 WP_159144429.1 cation diffusion facilitator family transporter -
  GRF56_RS21180 (GRF56_21180) yjbD 4599746..4600030 (+) 285 WP_005340165.1 DUF3811 domain-containing protein -
  GRF56_RS21185 (GRF56_21185) cspE 4600625..4600837 (+) 213 WP_005316548.1 RNA chaperone/antiterminator CspA -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21573.08 Da        Isoelectric Point: 5.9301

>NTDB_id=411097 GRF56_RS21160 WP_159144428.1 4596559..4597146(+) (ssb) [Aeromonas veronii strain AVNIH1]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSETWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRSQGGQGMGQNMGGQSQGNWGQPQQSMPAQQPMNQQRPAPAPQQ
NMQPQGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=411097 GRF56_RS21160 WP_159144428.1 4596559..4597146(+) (ssb) [Aeromonas veronii strain AVNIH1]
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTCGGGCAAGACCCGGAAGTACGCTACATGCCGAGTGG
CGGTGCTGTGACCAACATTACTCTGGCTACCTCCGAAACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGTACCG
AATGGCATCGCGTCGTCTTCATGGGCAAGCTGGCCGAAGTGGCTGGCGAGTATCTGAAGAAAGGCTCCCAAGTCTATGTG
GAAGGCAAACTGCAGACCCGCAAATGGCAAGATCAGAGCGGCCAGGAGCGCTACACCACTGAAGTGCTGGTCGACAGCTT
CACTGGCGTGATGCAGATGCTGGGTGGCCGTTCGCAAGGCGGTCAGGGCATGGGCCAGAACATGGGTGGCCAATCCCAGG
GTAACTGGGGTCAGCCGCAGCAGAGCATGCCTGCCCAGCAGCCGATGAATCAGCAGCGCCCGGCACCGGCTCCGCAGCAG
AACATGCAGCCGCAAGGCGGTTATGGCCGTCCTGCCCAGCAGCCGCAATCTGCGCCGCCGGTATATAACGAGCCGCCGAT
GGATTTCGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.347

100

0.708
  ssb Glaesserella parasuis strain SC1401

54.404

98.974

0.538
  ssb Neisseria gonorrhoeae MS11

46.842

97.436

0.456
  ssb Neisseria meningitidis MC58

46.316

97.436

0.451

Multiple sequence alignment