Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | GST84_RS02595 | Genome accession | NZ_CP047152 |
| Coordinates | 560382..560924 (+) | Length | 180 a.a. |
| NCBI ID | WP_021783897.1 | Uniprot ID | A0A1L5PMT2 |
| Organism | Pseudomonas putida strain PP27 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 555382..565924
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GST84_RS02580 (GST84_02555) | bfr | 555477..555941 (+) | 465 | WP_003255449.1 | bacterioferritin | - |
| GST84_RS02585 (GST84_02560) | uvrA | 556014..558848 (-) | 2835 | WP_028697804.1 | excinuclease ABC subunit UvrA | - |
| GST84_RS02590 (GST84_02565) | - | 558978..560372 (+) | 1395 | WP_021783896.1 | MFS transporter | - |
| GST84_RS02595 (GST84_02570) | ssb | 560382..560924 (+) | 543 | WP_021783897.1 | single-stranded DNA-binding protein | Machinery gene |
| GST84_RS02600 (GST84_02575) | - | 561015..562397 (-) | 1383 | WP_135192534.1 | PLP-dependent aminotransferase family protein | - |
| GST84_RS02605 (GST84_02580) | - | 562598..563383 (+) | 786 | WP_103443400.1 | TSUP family transporter | - |
| GST84_RS02610 (GST84_02585) | - | 563405..564166 (+) | 762 | WP_103443401.1 | SDR family NAD(P)-dependent oxidoreductase | - |
Sequence
Protein
Download Length: 180 a.a. Molecular weight: 19931.03 Da Isoelectric Point: 5.9286
>NTDB_id=411051 GST84_RS02595 WP_021783897.1 560382..560924(+) (ssb) [Pseudomonas putida strain PP27]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQCYIE
GKLQTREWEKDGIKRYTTEIIVDINGTMQLLGGRPQGQQQGGDPYNQGGGNYGGGQQQYNQAPPRQQAQRPQQAPQRPAP
QQPAPQPAADFDSFDDDIPF
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQCYIE
GKLQTREWEKDGIKRYTTEIIVDINGTMQLLGGRPQGQQQGGDPYNQGGGNYGGGQQQYNQAPPRQQAQRPQQAPQRPAP
QQPAPQPAADFDSFDDDIPF
Nucleotide
Download Length: 543 bp
>NTDB_id=411051 GST84_RS02595 WP_021783897.1 560382..560924(+) (ssb) [Pseudomonas putida strain PP27]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGTACCTGTGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGT
GGCACCGTGTGTCGTTGTTCGGCAAGGTTGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAGATCATTGTCGACATCAACGGCAC
CATGCAGCTGCTCGGCGGTCGTCCGCAGGGCCAGCAGCAGGGCGGTGACCCGTACAACCAGGGTGGCGGCAATTACGGTG
GCGGCCAGCAGCAATACAACCAGGCACCGCCACGCCAGCAGGCCCAGCGCCCGCAACAGGCCCCCCAGCGCCCAGCGCCG
CAACAGCCTGCGCCGCAGCCGGCTGCTGATTTCGACAGCTTCGATGACGATATTCCGTTCTGA
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGTACCTGTGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGT
GGCACCGTGTGTCGTTGTTCGGCAAGGTTGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAGATCATTGTCGACATCAACGGCAC
CATGCAGCTGCTCGGCGGTCGTCCGCAGGGCCAGCAGCAGGGCGGTGACCCGTACAACCAGGGTGGCGGCAATTACGGTG
GCGGCCAGCAGCAATACAACCAGGCACCGCCACGCCAGCAGGCCCAGCGCCCGCAACAGGCCCCCCAGCGCCCAGCGCCG
CAACAGCCTGCGCCGCAGCCGGCTGCTGATTTCGACAGCTTCGATGACGATATTCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
56.593 |
100 |
0.572 |
| ssb | Neisseria meningitidis MC58 |
49.451 |
100 |
0.5 |
| ssb | Neisseria gonorrhoeae MS11 |
49.451 |
100 |
0.5 |
| ssb | Glaesserella parasuis strain SC1401 |
48.913 |
100 |
0.5 |