Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GQ674_RS03810 Genome accession   NZ_CP047135
Coordinates   801529..802083 (+) Length   184 a.a.
NCBI ID   WP_159496016.1    Uniprot ID   -
Organism   Stenotrophomonas sp. 364     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 796529..807083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQ674_RS03795 (GQ674_03795) - 798744..799637 (-) 894 WP_159496013.1 ABC transporter ATP-binding protein -
  GQ674_RS03800 (GQ674_03800) - 799846..800271 (+) 426 WP_159496014.1 hypothetical protein -
  GQ674_RS03805 (GQ674_03805) - 800198..801229 (-) 1032 WP_159496015.1 LacI family DNA-binding transcriptional regulator -
  GQ674_RS03810 (GQ674_03810) ssb 801529..802083 (+) 555 WP_159496016.1 single-stranded DNA-binding protein Machinery gene
  GQ674_RS03815 (GQ674_03815) - 802533..802979 (+) 447 WP_159496017.1 hypothetical protein -
  GQ674_RS03820 (GQ674_03820) - 803240..804136 (+) 897 WP_159496018.1 TIM barrel protein -
  GQ674_RS03825 (GQ674_03825) - 804167..805852 (+) 1686 WP_159496019.1 GMC family oxidoreductase -
  GQ674_RS03830 (GQ674_03830) - 805852..806427 (+) 576 WP_159496020.1 gluconate 2-dehydrogenase subunit 3 family protein -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 19593.45 Da        Isoelectric Point: 5.3177

>NTDB_id=410918 GQ674_RS03810 WP_159496016.1 801529..802083(+) (ssb) [Stenotrophomonas sp. 364]
MARGINKVILVGNLGNDPDVKYTQGGMAITRISLATTSVRKDKDGNQQERTEWHRVVFFGKLGEIAGEYLRKGSSVYVEG
SLRYDKYTGQDGVEKYSTDIIADEMQMLGGRGEGGGGGGAGAGAGGNYGGGERPQRQQAPRQEYGGGGQRQGGQGGGYGQ
QRPQQQPQQSAPPMDDFADDDIPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=410918 GQ674_RS03810 WP_159496016.1 801529..802083(+) (ssb) [Stenotrophomonas sp. 364]
ATGGCGCGCGGCATCAATAAAGTCATCCTGGTCGGCAACCTCGGCAACGACCCGGACGTGAAGTACACCCAAGGCGGCAT
GGCGATCACCCGCATCAGCCTGGCCACCACCAGCGTCCGCAAGGACAAGGATGGCAACCAGCAGGAGCGTACCGAATGGC
ACCGCGTGGTGTTCTTCGGCAAGCTCGGTGAAATCGCCGGCGAATACCTGCGCAAGGGCAGCTCGGTCTACGTCGAAGGC
AGCCTGCGGTACGACAAGTACACCGGCCAGGACGGCGTGGAGAAGTACTCCACCGACATCATCGCCGACGAAATGCAGAT
GCTGGGCGGCCGCGGTGAAGGCGGCGGTGGTGGCGGTGCAGGCGCCGGTGCCGGTGGCAACTACGGCGGCGGCGAGCGCC
CGCAGCGCCAGCAGGCCCCGCGCCAGGAATACGGTGGCGGCGGTCAGCGCCAGGGCGGGCAGGGCGGTGGTTACGGCCAG
CAGCGCCCCCAGCAGCAGCCGCAGCAGTCGGCGCCGCCGATGGACGACTTCGCCGATGACGACATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

46.842

100

0.484
  ssb Vibrio cholerae strain A1552

45.876

100

0.484
  ssb Neisseria gonorrhoeae MS11

42.935

100

0.429
  ssb Neisseria meningitidis MC58

42.308

98.913

0.418

Multiple sequence alignment