Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DVT08_RS07150 Genome accession   NZ_CP047134
Coordinates   1572115..1572609 (-) Length   164 a.a.
NCBI ID   WP_004083791.1    Uniprot ID   Q9PDI7
Organism   Xylella fastidiosa subsp. multiplex strain IVIA5901     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1567115..1577609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DVT08_RS07135 (DVT08_007265) gloA 1567402..1567929 (+) 528 WP_004083787.1 lactoylglutathione lyase -
  DVT08_RS07140 (DVT08_007270) - 1568091..1569287 (-) 1197 WP_027700010.1 cation:proton antiporter -
  DVT08_RS07145 (DVT08_007275) - 1569608..1570518 (-) 911 Protein_1407 class I SAM-dependent methyltransferase -
  DVT08_RS07150 (DVT08_007280) ssb 1572115..1572609 (-) 495 WP_004083791.1 single-stranded DNA-binding protein Machinery gene
  DVT08_RS07155 (DVT08_007285) - 1572858..1573859 (+) 1002 WP_004083792.1 polyprenyl synthetase family protein -
  DVT08_RS07160 (DVT08_007290) cyoA 1574322..1575281 (+) 960 WP_004083793.1 ubiquinol oxidase subunit II -
  DVT08_RS07165 (DVT08_007295) cyoB 1575275..1577272 (+) 1998 WP_004083794.1 cytochrome o ubiquinol oxidase subunit I -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18211.20 Da        Isoelectric Point: 5.9575

>NTDB_id=410907 DVT08_RS07150 WP_004083791.1 1572115..1572609(-) (ssb) [Xylella fastidiosa subsp. multiplex strain IVIA5901]
MARGINKVILVGNLGNDPDIKYTQGGMTITTISLATTSVRKDKEGNTQERTEWHRVKFFGKLGEIAGEYLRKGSQCYIEG
SIRYDKFTGQDGQERYVTEIVADEMQMLGGRSDGGGMGGGGERPQRQTSQRQDYAPRRQARQPSQSPQSSPPPMDDFADD
DIPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=410907 DVT08_RS07150 WP_004083791.1 1572115..1572609(-) (ssb) [Xylella fastidiosa subsp. multiplex strain IVIA5901]
ATGGCCCGTGGTATCAATAAAGTCATCCTCGTCGGTAACCTCGGTAACGATCCGGATATCAAATACACCCAAGGTGGTAT
GACGATCACTACCATCAGCTTGGCGACAACCAGTGTTCGTAAGGACAAGGAGGGCAATACCCAGGAGCGGACCGAATGGC
ACAGGGTCAAGTTTTTCGGAAAACTCGGTGAGATTGCCGGGGAATATCTACGTAAGGGATCACAGTGCTATATCGAAGGG
AGCATTCGCTATGACAAGTTCACTGGCCAGGATGGTCAGGAGCGCTATGTTACAGAGATTGTTGCTGATGAGATGCAAAT
GTTGGGTGGCCGTAGCGATGGTGGCGGTATGGGCGGGGGCGGTGAGCGCCCACAGCGTCAAACATCGCAGCGTCAGGATT
ACGCCCCACGTCGCCAGGCCCGTCAGCCGTCACAGTCGCCGCAATCTTCACCGCCGCCGATGGACGATTTCGCTGATGAC
GATATTCCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PDI7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.153

100

0.53
  ssb Glaesserella parasuis strain SC1401

45.81

100

0.5
  ssb Neisseria meningitidis MC58

41.618

100

0.439
  ssb Neisseria gonorrhoeae MS11

41.04

100

0.433

Multiple sequence alignment