Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | DVT08_RS03025 | Genome accession | NZ_CP047134 |
| Coordinates | 707187..707633 (-) | Length | 148 a.a. |
| NCBI ID | WP_021358633.1 | Uniprot ID | - |
| Organism | Xylella fastidiosa subsp. multiplex strain IVIA5901 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 700367..722164 | 707187..707633 | within | 0 |
Gene organization within MGE regions
Location: 700367..722164
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DVT08_RS02985 (DVT08_003040) | - | 700367..701197 (-) | 831 | WP_004083974.1 | ABC transporter ATP-binding protein | - |
| DVT08_RS02990 (DVT08_003045) | - | 701203..702321 (-) | 1119 | WP_004083972.1 | ABC transporter permease | - |
| DVT08_RS02995 (DVT08_003050) | - | 702431..703693 (+) | 1263 | WP_012337721.1 | threonine/serine exporter family protein | - |
| DVT08_RS03000 (DVT08_003060) | - | 704334..704540 (+) | 207 | WP_071869858.1 | hypothetical protein | - |
| DVT08_RS03005 (DVT08_003065) | - | 704604..704816 (+) | 213 | WP_228304324.1 | hypothetical protein | - |
| DVT08_RS03010 (DVT08_003070) | - | 704880..705080 (+) | 201 | WP_238836473.1 | hypothetical protein | - |
| DVT08_RS03015 (DVT08_003075) | - | 705721..706893 (-) | 1173 | WP_004083967.1 | integrase | - |
| DVT08_RS03020 (DVT08_003080) | - | 706893..707165 (-) | 273 | WP_004083966.1 | hypothetical protein | - |
| DVT08_RS03025 (DVT08_003085) | ssb | 707187..707633 (-) | 447 | WP_021358633.1 | single-stranded DNA-binding protein | Machinery gene |
| DVT08_RS03030 (DVT08_003090) | - | 707617..708087 (-) | 471 | WP_076613218.1 | DUF5131 family protein | - |
| DVT08_RS03035 (DVT08_003095) | - | 708150..708311 (-) | 162 | WP_238836474.1 | hypothetical protein | - |
| DVT08_RS03040 (DVT08_003100) | - | 708311..708844 (-) | 534 | WP_004083962.1 | hypothetical protein | - |
| DVT08_RS03045 (DVT08_003105) | - | 708841..709434 (-) | 594 | WP_004083960.1 | DapH/DapD/GlmU-related protein | - |
| DVT08_RS03050 (DVT08_003110) | - | 709527..710060 (-) | 534 | WP_012337723.1 | pilin | - |
| DVT08_RS03055 (DVT08_003115) | - | 710193..710459 (-) | 267 | WP_004084112.1 | hypothetical protein | - |
| DVT08_RS03060 (DVT08_003120) | - | 710456..710734 (-) | 279 | WP_004083957.1 | hypothetical protein | - |
| DVT08_RS03065 (DVT08_003125) | - | 710731..710952 (-) | 222 | WP_021358638.1 | hypothetical protein | - |
| DVT08_RS03070 (DVT08_003130) | - | 710949..711407 (-) | 459 | WP_004084109.1 | hypothetical protein | - |
| DVT08_RS03075 (DVT08_003135) | - | 711404..711868 (-) | 465 | WP_021358639.1 | DUF1566 domain-containing protein | - |
| DVT08_RS03080 (DVT08_003140) | - | 711865..712362 (-) | 498 | WP_021358640.1 | hypothetical protein | - |
| DVT08_RS03085 (DVT08_003145) | - | 712352..712975 (+) | 624 | WP_004083954.1 | hypothetical protein | - |
| DVT08_RS03090 (DVT08_003150) | - | 713077..713478 (-) | 402 | WP_004084104.1 | hypothetical protein | - |
| DVT08_RS03095 (DVT08_003155) | - | 713477..713965 (+) | 489 | WP_238836475.1 | CHC2 zinc finger domain-containing protein | - |
| DVT08_RS03100 (DVT08_003160) | - | 713901..714545 (+) | 645 | WP_228762222.1 | terminase gpA endonuclease subunit | - |
| DVT08_RS03105 (DVT08_003165) | - | 714622..714858 (+) | 237 | WP_012337727.1 | hypothetical protein | - |
| DVT08_RS03110 (DVT08_003170) | - | 714855..715370 (+) | 516 | WP_004083947.1 | phage portal protein | - |
| DVT08_RS03115 (DVT08_003175) | - | 715487..715777 (+) | 291 | WP_076613257.1 | hypothetical protein | - |
| DVT08_RS11950 | - | 715791..715913 (+) | 123 | WP_324187556.1 | hypothetical protein | - |
| DVT08_RS03120 (DVT08_003180) | - | 715904..716332 (+) | 429 | WP_069107012.1 | hypothetical protein | - |
| DVT08_RS03125 (DVT08_003185) | - | 716329..716565 (+) | 237 | WP_004083943.1 | hypothetical protein | - |
| DVT08_RS03130 (DVT08_003190) | - | 716555..719380 (+) | 2826 | WP_169709956.1 | phage tail protein | - |
| DVT08_RS03135 (DVT08_003195) | - | 719373..720068 (+) | 696 | WP_228762224.1 | hypothetical protein | - |
| DVT08_RS03140 (DVT08_003200) | - | 720029..720307 (+) | 279 | WP_228762225.1 | hypothetical protein | - |
| DVT08_RS03145 (DVT08_003205) | - | 720416..721078 (+) | 663 | WP_228762226.1 | hypothetical protein | - |
| DVT08_RS11585 | - | 721331..721447 (+) | 117 | Protein_607 | site-specific DNA-methyltransferase | - |
| DVT08_RS03160 (DVT08_003220) | - | 721913..722164 (+) | 252 | WP_004086775.1 | type II toxin-antitoxin system antitoxin SocA domain-containing protein | - |
Sequence
Protein
Download Length: 148 a.a. Molecular weight: 16536.38 Da Isoelectric Point: 6.4871
>NTDB_id=410901 DVT08_RS03025 WP_021358633.1 707187..707633(-) (ssb) [Xylella fastidiosa subsp. multiplex strain IVIA5901]
MARGINKVILVGNLGNEPDIKYTQSGMTITSISLATSSGRKDREGNTQERTEWHRVKFFGKLGEIAAEYLHKGSQCYIEG
TIRYDKFTGQDGQERYVTEIIADQMHMLGGRGEGSSGITPQRQPAKVRNNDKAYAYAGDDFHDDDIPF
MARGINKVILVGNLGNEPDIKYTQSGMTITSISLATSSGRKDREGNTQERTEWHRVKFFGKLGEIAAEYLHKGSQCYIEG
TIRYDKFTGQDGQERYVTEIIADQMHMLGGRGEGSSGITPQRQPAKVRNNDKAYAYAGDDFHDDDIPF
Nucleotide
Download Length: 447 bp
>NTDB_id=410901 DVT08_RS03025 WP_021358633.1 707187..707633(-) (ssb) [Xylella fastidiosa subsp. multiplex strain IVIA5901]
ATGGCACGCGGAATTAACAAGGTGATCCTAGTCGGCAACCTGGGGAACGAACCGGATATCAAATACACCCAAAGCGGCAT
GACGATCACCAGCATTAGCCTAGCGACCAGCAGCGGACGCAAGGACAGAGAGGGCAATACCCAGGAGCGGACCGAATGGC
ACCGCGTCAAGTTTTTCGGAAAGCTTGGCGAGATTGCCGCCGAATATCTGCATAAGGGATCGCAGTGCTACATAGAGGGC
ACCATCCGTTACGACAAGTTCACCGGCCAGGACGGTCAGGAGCGTTATGTCACTGAGATTATTGCTGACCAAATGCACAT
GCTCGGCGGTCGCGGTGAAGGCTCCAGCGGTATCACGCCACAGCGGCAACCGGCAAAGGTCCGTAACAACGATAAAGCCT
ATGCGTATGCAGGCGACGACTTCCACGATGACGACATCCCGTTTTAG
ATGGCACGCGGAATTAACAAGGTGATCCTAGTCGGCAACCTGGGGAACGAACCGGATATCAAATACACCCAAAGCGGCAT
GACGATCACCAGCATTAGCCTAGCGACCAGCAGCGGACGCAAGGACAGAGAGGGCAATACCCAGGAGCGGACCGAATGGC
ACCGCGTCAAGTTTTTCGGAAAGCTTGGCGAGATTGCCGCCGAATATCTGCATAAGGGATCGCAGTGCTACATAGAGGGC
ACCATCCGTTACGACAAGTTCACCGGCCAGGACGGTCAGGAGCGTTATGTCACTGAGATTATTGCTGACCAAATGCACAT
GCTCGGCGGTCGCGGTGAAGGCTCCAGCGGTATCACGCCACAGCGGCAACCGGCAAAGGTCCGTAACAACGATAAAGCCT
ATGCGTATGCAGGCGACGACTTCCACGATGACGACATCCCGTTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
41.477 |
100 |
0.493 |
| ssb | Neisseria meningitidis MC58 |
38.728 |
100 |
0.453 |
| ssb | Neisseria gonorrhoeae MS11 |
38.728 |
100 |
0.453 |
| ssb | Glaesserella parasuis strain SC1401 |
41.304 |
93.243 |
0.385 |