Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GQS55_RS01720 Genome accession   NZ_CP047130
Coordinates   403539..404213 (+) Length   224 a.a.
NCBI ID   WP_159817370.1    Uniprot ID   -
Organism   Colwellia sp. 20A7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 398539..409213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQS55_RS01705 pssA 399743..401071 (+) 1329 WP_159817364.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  GQS55_RS01710 - 401089..402699 (-) 1611 WP_159817366.1 hypothetical protein -
  GQS55_RS01715 - 402952..403347 (+) 396 WP_159817368.1 thioesterase family protein -
  GQS55_RS01720 ssb 403539..404213 (+) 675 WP_159817370.1 single-stranded DNA-binding protein Machinery gene
  GQS55_RS01725 - 404307..404534 (+) 228 WP_159817372.1 glutaredoxin family protein -
  GQS55_RS01730 - 404633..406579 (+) 1947 WP_159817374.1 tetratricopeptide repeat-containing diguanylate cyclase -
  GQS55_RS01735 - 406569..407759 (+) 1191 WP_159817376.1 hypothetical protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24412.94 Da        Isoelectric Point: 5.9090

>NTDB_id=410829 GQS55_RS01720 WP_159817370.1 403539..404213(+) (ssb) [Colwellia sp. 20A7]
MAGVNKVIIVGNLGKDPEVRFMPNGGAVANITVATSDSWKDKQTGEQKEKTEWHRVVMFGKLAEIAGEYLKKGSKVYLEG
SLQTRKWTNPQGQDQYTTEIVLQGFNGVMQMLDGKPSGQNTGFQQQAPQQQGQAQNTGFQQQAPQQQGGYAPQAQQPAPQ
QAYNKPAQQGGYTQQPQQAPQQQGGYAPQGQPQGGFAPQGQQPQQAPKVNPQEPSIDFDDDIPF

Nucleotide


Download         Length: 675 bp        

>NTDB_id=410829 GQS55_RS01720 WP_159817370.1 403539..404213(+) (ssb) [Colwellia sp. 20A7]
ATGGCGGGTGTAAATAAAGTAATTATTGTAGGTAACTTAGGTAAAGATCCTGAAGTGCGTTTTATGCCTAATGGTGGTGC
GGTGGCAAATATCACTGTAGCAACATCTGACTCATGGAAAGATAAGCAAACTGGTGAGCAAAAAGAAAAAACAGAATGGC
ACCGTGTTGTTATGTTTGGTAAATTAGCTGAAATTGCTGGTGAATACTTAAAAAAAGGTTCAAAAGTTTATCTTGAGGGC
TCGTTACAAACGCGTAAGTGGACTAACCCACAAGGGCAAGATCAATATACTACTGAAATTGTATTACAAGGATTTAATGG
TGTAATGCAAATGCTAGACGGTAAACCGTCAGGCCAAAATACTGGTTTTCAGCAACAAGCGCCTCAACAACAAGGTCAAG
CGCAAAACACTGGCTTTCAGCAACAAGCACCTCAACAACAAGGTGGTTATGCACCTCAAGCGCAGCAACCGGCACCACAA
CAAGCTTATAACAAACCAGCACAACAAGGTGGTTATACGCAACAACCTCAACAAGCTCCTCAACAACAAGGTGGTTATGC
ACCACAAGGTCAGCCACAAGGCGGTTTTGCCCCGCAAGGACAACAGCCTCAACAAGCACCTAAAGTGAATCCACAAGAGC
CATCAATTGATTTTGATGATGATATACCTTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.252

99.107

0.518
  ssb Glaesserella parasuis strain SC1401

48.661

100

0.487
  ssb Neisseria meningitidis MC58

39.823

100

0.402
  ssb Neisseria gonorrhoeae MS11

40.271

98.661

0.397

Multiple sequence alignment