Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   GQ677_RS09380 Genome accession   NZ_CP047120
Coordinates   1826481..1828451 (-) Length   656 a.a.
NCBI ID   WP_136274058.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 1085     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1821481..1833451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQ677_RS10705 (GQ677_09355) - 1821872..1821955 (+) 84 Protein_1789 IS3 family transposase -
  GQ677_RS09360 (GQ677_09360) amiF 1821993..1822916 (-) 924 WP_002986000.1 ABC transporter ATP-binding protein Regulator
  GQ677_RS09365 (GQ677_09365) amiE 1822909..1823979 (-) 1071 WP_136274057.1 ABC transporter ATP-binding protein Regulator
  GQ677_RS09370 (GQ677_09370) amiD 1823988..1824914 (-) 927 WP_010921892.1 oligopeptide ABC transporter permease OppC Regulator
  GQ677_RS09375 (GQ677_09375) amiC 1824914..1826416 (-) 1503 WP_010921891.1 ABC transporter permease Regulator
  GQ677_RS09380 (GQ677_09380) amiA 1826481..1828451 (-) 1971 WP_136274058.1 peptide ABC transporter substrate-binding protein Regulator
  GQ677_RS09385 (GQ677_09385) pbp3 1828782..1830014 (+) 1233 WP_136274059.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  GQ677_RS09390 (GQ677_09390) - 1830182..1831363 (+) 1182 WP_015055912.1 D-alanyl-D-alanine carboxypeptidase family protein -
  GQ677_RS09395 (GQ677_09395) sufB 1831515..1832933 (-) 1419 WP_136274060.1 Fe-S cluster assembly protein SufB -
  GQ677_RS09400 (GQ677_09400) sufU 1832926..1833405 (-) 480 WP_002986018.1 Fe-S cluster assembly sulfur transfer protein SufU -

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 72116.62 Da        Isoelectric Point: 5.1964

>NTDB_id=410761 GQ677_RS09380 WP_136274058.1 1826481..1828451(-) (amiA) [Streptococcus pyogenes strain 1085]
MKKSKWLAAVSIAILSVSALAACGNKNASGGSEATKTYKYVFVNDPKSLDYILTNGGGTTDVITQMVDGLLENDEYGNLV
PSLAKDWKVSKDGLTYTYTLRDGVSWYTADGEEYAPVTAEDFVTGLKHAVDDKSDALYVVEDSIKNLKAYQNGEVDFKEV
GVKALDDKTVQYTLNKPESYWNSKTTYSVLFPVNAKFLKSKGKDFGTTDPSSILVNGAYFLSAFTSKSSMEFHKNENYWD
AKNVGIESVKLTYSDGSDPGSFYKNFDKGEFSVARLYPNDPTYKSAKKNYADNITYGMLTGDIRHLTWNLNRTSFKNTKK
DPAQQDAGKKALNNKDFRQAIQFAFDRASFQAQTAGQDAKTKALRNMLVPPTFVTIGESDFGSEVEKEMAKLGDEWKDVN
LADAQDGFYNPEKAKAEFAKAKEALTAEGVTFPVQLDYPVDQANAATVQEAQSFKQSVEASLGKENVIVNVLETETSTHE
AQGFYAETPEQQDYDIISSWWGPDYQDPRTYLDIMSPVGGGSVIQKLGIKAGQNKDVVAAAGLDTYQTLLDEAAAITDDN
DARYKAYAKAQAYLTDNAVDIPVVALGGTPRVTKAVPFSGGFSWAGSKGPLAYKGMKLQDKPVTVKQYEKAKEKWMKAKA
KSNAKYAEKLADHVEK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=410761 GQ677_RS09380 WP_136274058.1 1826481..1828451(-) (amiA) [Streptococcus pyogenes strain 1085]
ATGAAGAAAAGTAAATGGTTGGCAGCTGTAAGTATTGCGATCTTGTCAGTATCCGCTTTGGCAGCTTGTGGTAATAAAAA
TGCTTCAGGTGGCTCAGAAGCTACAAAAACCTACAAGTACGTTTTTGTTAACGATCCAAAATCATTGGATTATATTTTGA
CTAATGGCGGTGGAACGACTGATGTGATAACACAAATGGTTGATGGTCTTTTGGAAAACGATGAGTATGGTAATTTAGTA
CCATCACTTGCTAAAGATTGGAAGGTTTCAAAAGACGGTCTGACTTATACTTATACTCTTCGCGATGGTGTCTCTTGGTA
TACGGCTGATGGTGAAGAATATGCCCCAGTAACAGCAGAAGATTTTGTGACTGGTTTGAAGCACGCGGTTGACGATAAAT
CAGATGCTCTTTACGTTGTTGAAGATTCAATAAAAAACTTAAAGGCTTACCAAAATGGTGAAGTAGATTTTAAAGAAGTT
GGTGTCAAAGCCCTTGACGATAAAACTGTTCAGTATACTTTGAACAAGCCTGAAAGCTACTGGAATTCAAAAACAACTTA
TAGTGTGCTTTTCCCAGTTAATGCGAAATTTTTGAAGTCAAAAGGTAAAGATTTTGGTACAACCGATCCATCATCAATCC
TTGTTAATGGTGCTTACTTCTTGAGCGCCTTCACCTCAAAATCATCTATGGAATTCCATAAAAATGAAAACTACTGGGAT
GCTAAGAATGTTGGGATAGAATCTGTTAAATTGACTTACTCAGATGGTTCAGACCCAGGTTCGTTCTACAAGAACTTTGA
CAAGGGTGAGTTCAGCGTTGCACGACTTTACCCAAATGACCCTACCTACAAATCAGCTAAGAAAAACTATGCTGATAACA
TTACTTACGGAATGTTGACTGGAGATATCCGTCATTTAACATGGAATTTGAACCGTACTTCTTTCAAAAACACTAAGAAA
GACCCTGCACAACAAGATGCCGGTAAGAAAGCTCTTAACAACAAGGATTTTCGTCAAGCTATTCAGTTTGCTTTTGACCG
AGCGTCATTCCAAGCACAAACTGCAGGTCAAGATGCCAAAACAAAAGCCTTACGTAACATGCTTGTCCCACCAACATTTG
TGACCATTGGAGAAAGTGATTTTGGTTCAGAAGTTGAAAAGGAAATGGCAAAACTTGGTGATGAATGGAAAGACGTTAAC
TTAGCTGATGCTCAAGATGGTTTCTATAATCCTGAAAAAGCAAAAGCTGAGTTTGCAAAAGCCAAAGAAGCTTTAACAGC
TGAAGGTGTAACCTTCCCAGTTCAATTAGATTACCCTGTTGACCAAGCAAACGCAGCAACTGTTCAGGAAGCCCAGTCTT
TCAAACAATCTGTTGAAGCATCTCTTGGTAAAGAAAATGTCATTGTCAATGTTCTTGAAACAGAAACATCAACTCACGAA
GCCCAAGGCTTCTATGCTGAGACCCCAGAACAACAAGACTACGATATCATTTCATCATGGTGGGGACCAGACTATCAAGA
TCCACGGACCTACCTTGACATCATGAGTCCAGTAGGTGGTGGATCTGTTATCCAAAAACTTGGAATCAAAGCAGGTCAAA
ATAAGGATGTTGTGGCAGCTGCAGGCCTTGATACCTACCAAACTCTTCTTGATGAAGCAGCAGCAATTACAGACGACAAC
GATGCGCGCTATAAAGCTTACGCAAAAGCACAAGCCTACCTTACAGATAATGCCGTAGATATTCCAGTTGTGGCATTGGG
TGGCACTCCACGAGTTACTAAAGCCGTTCCATTTAGCGGGGGCTTCTCTTGGGCAGGGTCTAAAGGTCCTCTAGCATATA
AAGGAATGAAACTTCAAGACAAACCTGTCACAGTAAAACAATACGAAAAAGCAAAAGAAAAATGGATGAAAGCAAAGGCT
AAGTCAAATGCAAAATATGCTGAGAAGTTAGCTGATCACGTTGAAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(79-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

50.983

100

0.514
  amiA3 Streptococcus thermophilus LMG 18311

49.698

100

0.502
  amiA3 Streptococcus thermophilus LMD-9

49.396

100

0.498

Multiple sequence alignment