Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   GQ677_RS09375 Genome accession   NZ_CP047120
Coordinates   1824914..1826416 (-) Length   500 a.a.
NCBI ID   WP_010921891.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 1085     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1819914..1831416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQ677_RS10700 - 1821419..1821734 (+) 316 Protein_1788 IS3 family transposase -
  GQ677_RS10705 (GQ677_09355) - 1821872..1821955 (+) 84 Protein_1789 IS3 family transposase -
  GQ677_RS09360 (GQ677_09360) amiF 1821993..1822916 (-) 924 WP_002986000.1 ABC transporter ATP-binding protein Regulator
  GQ677_RS09365 (GQ677_09365) amiE 1822909..1823979 (-) 1071 WP_136274057.1 ABC transporter ATP-binding protein Regulator
  GQ677_RS09370 (GQ677_09370) amiD 1823988..1824914 (-) 927 WP_010921892.1 oligopeptide ABC transporter permease OppC Regulator
  GQ677_RS09375 (GQ677_09375) amiC 1824914..1826416 (-) 1503 WP_010921891.1 ABC transporter permease Regulator
  GQ677_RS09380 (GQ677_09380) amiA 1826481..1828451 (-) 1971 WP_136274058.1 peptide ABC transporter substrate-binding protein Regulator
  GQ677_RS09385 (GQ677_09385) pbp3 1828782..1830014 (+) 1233 WP_136274059.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  GQ677_RS09390 (GQ677_09390) - 1830182..1831363 (+) 1182 WP_015055912.1 D-alanyl-D-alanine carboxypeptidase family protein -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 56080.41 Da        Isoelectric Point: 10.1893

>NTDB_id=410760 GQ677_RS09375 WP_010921891.1 1824914..1826416(-) (amiC) [Streptococcus pyogenes strain 1085]
MKKYILNRIMRSLVSVVLVTALTYTIVYTLVPTSLIFKQDPNYNKMTTTPDKKVAYENLTFQRMGYVNYFSSKELKDNAS
KVDSSVTTEATSANKAIYEKYIDSLGNGWQLKRFPTSKQFYAIRNIPIYERVWNFFSNLVVIDHPWKIQDKDNPKLARYI
RLEKDKSVGWSLVGSGTKHKYLLYTNGKFPYLHQNFVTLNLGTSYPTYSNIPVLQVISQGQGRTALQDVTFPSGVTKKSS
VDIYSRSYKNPKSLDDITKVNYGKGDSYTKTINNYVDPSMIHNSFVIGFFGVMFSYIVGLPLGLFMARFKNTYFDSFSTA
TMTFMLALPSIAVIYVVRFLGGMVGLPDSFPMLGASDPKSYILPALILGILNIPTTVIWFRRYLVDLQASDWVRFARSKG
LSESEIYRGHLFKNAMVPIVSGVPASIILAIGGATLTETVFAFPGMGKMLIDSIKSANNSMIVGLTFIFTVLSIVSLLLG
DIVMTLVDPRIKLSTKKGGK

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=410760 GQ677_RS09375 WP_010921891.1 1824914..1826416(-) (amiC) [Streptococcus pyogenes strain 1085]
ATGAAAAAATATATTTTAAACCGTATCATGCGATCGTTAGTGTCGGTAGTTCTGGTAACGGCTTTAACATACACCATCGT
ATATACTCTAGTACCTACCAGCCTTATCTTTAAACAAGACCCTAATTATAATAAAATGACAACAACACCAGATAAAAAAG
TAGCGTATGAAAATCTAACTTTTCAACGTATGGGTTATGTCAATTATTTTTCAAGCAAAGAATTAAAAGATAATGCTTCT
AAAGTAGATAGTAGTGTAACGACAGAAGCAACTAGTGCTAACAAAGCTATCTATGAGAAGTATATTGATTCTCTTGGCAA
TGGCTGGCAGCTAAAACGCTTCCCCACTAGCAAACAGTTTTATGCAATTCGCAATATTCCTATTTACGAACGTGTTTGGA
ACTTTTTCTCAAATCTAGTTGTTATTGATCACCCTTGGAAGATTCAGGATAAAGATAATCCAAAATTAGCTAGGTATATT
CGTCTAGAAAAAGATAAATCAGTTGGCTGGTCACTTGTTGGTTCGGGGACAAAACATAAGTATCTCCTCTATACTAACGG
AAAATTTCCTTATCTTCACCAAAACTTTGTTACCCTAAACTTAGGGACATCTTATCCAACATACAGCAATATTCCTGTTC
TTCAGGTCATTTCACAAGGGCAAGGACGAACAGCTCTTCAAGATGTGACCTTCCCATCAGGTGTCACTAAGAAATCGTCA
GTGGATATCTATAGCCGTAGCTACAAAAATCCAAAATCATTGGATGATATCACCAAGGTAAACTATGGTAAGGGAGATTC
CTACACTAAAACCATCAATAATTATGTCGACCCATCAATGATTCACAATTCTTTTGTAATTGGTTTTTTTGGTGTTATGT
TTTCCTATATCGTTGGTTTGCCTCTTGGTTTATTTATGGCTCGGTTTAAAAATACCTATTTTGACAGTTTCTCAACAGCG
ACCATGACCTTCATGCTTGCTTTACCAAGTATTGCTGTTATCTATGTTGTTCGCTTCCTAGGTGGCATGGTTGGTTTACC
AGATAGTTTCCCAATGCTGGGGGCATCTGATCCTAAATCTTATATTTTACCAGCCCTTATTTTAGGAATTTTAAATATTC
CAACTACGGTTATCTGGTTCCGTCGCTATCTTGTTGACCTTCAGGCCAGCGATTGGGTACGTTTTGCGCGTTCAAAAGGA
TTATCAGAATCTGAAATTTACAGAGGGCATCTCTTCAAAAATGCCATGGTCCCAATTGTGTCAGGGGTTCCTGCAAGTAT
TATCCTTGCTATTGGTGGTGCAACATTAACAGAGACTGTCTTTGCCTTCCCGGGTATGGGTAAAATGTTAATTGATTCTA
TTAAATCTGCTAACAATTCTATGATTGTTGGATTAACCTTTATCTTCACTGTCTTGTCAATTGTTTCACTTTTACTAGGA
GATATTGTCATGACCCTTGTCGATCCACGTATTAAATTGTCAACAAAAAAAGGAGGTAAGTAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(299-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

59.8

100

0.598
  amiC Streptococcus thermophilus LMD-9

59.4

100

0.594
  amiC Streptococcus thermophilus LMG 18311

59.4

100

0.594

Multiple sequence alignment