Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   GE573_RS07105 Genome accession   NZ_CP047119
Coordinates   1368087..1368776 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain AK-0     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1363087..1373776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE573_RS07070 (GE573_01411) - 1363285..1363767 (-) 483 WP_003151394.1 flagellar protein FlgN -
  GE573_RS07075 (GE573_01412) flgM 1363782..1364048 (-) 267 WP_190664620.1 flagellar biosynthesis anti-sigma factor FlgM -
  GE573_RS07080 (GE573_01413) - 1364118..1364537 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  GE573_RS07085 comFC 1364611..1365300 (-) 690 WP_206583745.1 ComF family protein Machinery gene
  GE573_RS07090 (GE573_01415) - 1365306..1365590 (-) 285 WP_007407481.1 late competence development ComFB family protein -
  GE573_RS07095 (GE573_01416) comFA 1365648..1367033 (-) 1386 WP_190664622.1 DEAD/DEAH box helicase Machinery gene
  GE573_RS07100 (GE573_01417) - 1367141..1367989 (-) 849 WP_063094272.1 DegV family protein -
  GE573_RS07105 (GE573_01418) degU 1368087..1368776 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  GE573_RS07110 (GE573_01419) degS 1368853..1370016 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  GE573_RS07115 (GE573_01420) - 1370239..1370886 (+) 648 WP_061581228.1 YigZ family protein -
  GE573_RS07120 (GE573_01421) - 1370891..1372111 (+) 1221 WP_061581227.1 LCP family protein -
  GE573_RS07125 (GE573_01422) - 1372210..1373286 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=410668 GE573_RS07105 WP_003219701.1 1368087..1368776(-) (degU) [Bacillus velezensis strain AK-0]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=410668 GE573_RS07105 WP_003219701.1 1368087..1368776(-) (degU) [Bacillus velezensis strain AK-0]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment