Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   GE573_RS07085 Genome accession   NZ_CP047119
Coordinates   1364611..1365300 (-) Length   229 a.a.
NCBI ID   WP_206583745.1    Uniprot ID   -
Organism   Bacillus velezensis strain AK-0     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1359611..1370300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE573_RS07050 (GE573_01407) fliW 1359702..1360133 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  GE573_RS07055 (GE573_01408) - 1360163..1360732 (-) 570 WP_190664619.1 DUF6470 family protein -
  GE573_RS07060 (GE573_01409) flgL 1360823..1361740 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  GE573_RS07065 (GE573_01410) flgK 1361752..1363269 (-) 1518 WP_063094265.1 flagellar hook-associated protein FlgK -
  GE573_RS07070 (GE573_01411) - 1363285..1363767 (-) 483 WP_003151394.1 flagellar protein FlgN -
  GE573_RS07075 (GE573_01412) flgM 1363782..1364048 (-) 267 WP_190664620.1 flagellar biosynthesis anti-sigma factor FlgM -
  GE573_RS07080 (GE573_01413) - 1364118..1364537 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  GE573_RS07085 comFC 1364611..1365300 (-) 690 WP_206583745.1 ComF family protein Machinery gene
  GE573_RS07090 (GE573_01415) - 1365306..1365590 (-) 285 WP_007407481.1 late competence development ComFB family protein -
  GE573_RS07095 (GE573_01416) comFA 1365648..1367033 (-) 1386 WP_190664622.1 DEAD/DEAH box helicase Machinery gene
  GE573_RS07100 (GE573_01417) - 1367141..1367989 (-) 849 WP_063094272.1 DegV family protein -
  GE573_RS07105 (GE573_01418) degU 1368087..1368776 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  GE573_RS07110 (GE573_01419) degS 1368853..1370016 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25283.97 Da        Isoelectric Point: 8.2927

>NTDB_id=410666 GE573_RS07085 WP_206583745.1 1364611..1365300(-) (comFC) [Bacillus velezensis strain AK-0]
MNCLLCDSPISSSLTWRSLFSLAPEQEICSICSSQFEKIEGPVCSICGRPQELNEKCADCAARESKTEKRFLLRRNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=410666 GE573_RS07085 WP_206583745.1 1364611..1365300(-) (comFC) [Bacillus velezensis strain AK-0]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAACAAGA
GATATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTTAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCGAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.471

99.127

0.59

Multiple sequence alignment