Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   GE573_RS07095 Genome accession   NZ_CP047119
Coordinates   1365648..1367033 (-) Length   461 a.a.
NCBI ID   WP_190664622.1    Uniprot ID   -
Organism   Bacillus velezensis strain AK-0     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1360648..1372033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE573_RS07060 (GE573_01409) flgL 1360823..1361740 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  GE573_RS07065 (GE573_01410) flgK 1361752..1363269 (-) 1518 WP_063094265.1 flagellar hook-associated protein FlgK -
  GE573_RS07070 (GE573_01411) - 1363285..1363767 (-) 483 WP_003151394.1 flagellar protein FlgN -
  GE573_RS07075 (GE573_01412) flgM 1363782..1364048 (-) 267 WP_190664620.1 flagellar biosynthesis anti-sigma factor FlgM -
  GE573_RS07080 (GE573_01413) - 1364118..1364537 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  GE573_RS07085 comFC 1364611..1365300 (-) 690 WP_206583745.1 ComF family protein Machinery gene
  GE573_RS07090 (GE573_01415) - 1365306..1365590 (-) 285 WP_007407481.1 late competence development ComFB family protein -
  GE573_RS07095 (GE573_01416) comFA 1365648..1367033 (-) 1386 WP_190664622.1 DEAD/DEAH box helicase Machinery gene
  GE573_RS07100 (GE573_01417) - 1367141..1367989 (-) 849 WP_063094272.1 DegV family protein -
  GE573_RS07105 (GE573_01418) degU 1368087..1368776 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  GE573_RS07110 (GE573_01419) degS 1368853..1370016 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  GE573_RS07115 (GE573_01420) - 1370239..1370886 (+) 648 WP_061581228.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52732.22 Da        Isoelectric Point: 10.1592

>NTDB_id=410667 GE573_RS07095 WP_190664622.1 1365648..1367033(-) (comFA) [Bacillus velezensis strain AK-0]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRIKRVTEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYYWNQAHENSWEPVKLSWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEANLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RHKLQSQLPVFLFVPSVHILKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGLLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGMTNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=410667 GE573_RS07095 WP_190664622.1 1365648..1367033(-) (comFA) [Bacillus velezensis strain AK-0]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTACGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCAGCGCATCAAGCGTGTTACAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAATCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTATTGGAATCAAGCCCATGAAAACAG
CTGGGAACCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAGGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCTCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGTCTGACTCCGTTAATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCAATTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGAAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCATAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACATATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCTGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATGACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(329-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.391

99.783

0.623

Multiple sequence alignment