Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | GRI00_RS00040 | Genome accession | NZ_CP047081 |
| Coordinates | 9346..9873 (+) | Length | 175 a.a. |
| NCBI ID | WP_002833866.1 | Uniprot ID | A0A0R2H8I2 |
| Organism | Pediococcus pentosaceus strain MR001 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 4346..14873
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GRI00_RS00030 (GRI00_00030) | gyrA | 6230..8779 (+) | 2550 | WP_220688891.1 | DNA gyrase subunit A | - |
| GRI00_RS00035 (GRI00_00035) | rpsF | 9026..9310 (+) | 285 | WP_002833865.1 | 30S ribosomal protein S6 | - |
| GRI00_RS00040 (GRI00_00040) | ssb | 9346..9873 (+) | 528 | WP_002833866.1 | single-stranded DNA-binding protein | Machinery gene |
| GRI00_RS00045 (GRI00_00045) | rpsR | 9897..10133 (+) | 237 | WP_002833867.1 | 30S ribosomal protein S18 | - |
| GRI00_RS00050 (GRI00_00050) | - | 10336..12336 (+) | 2001 | WP_002833868.1 | DHH family phosphoesterase | - |
| GRI00_RS00055 (GRI00_00055) | rplI | 12342..12794 (+) | 453 | WP_220688892.1 | 50S ribosomal protein L9 | - |
| GRI00_RS00060 (GRI00_00060) | dnaB | 12843..14240 (+) | 1398 | WP_002833870.1 | replicative DNA helicase | - |
Sequence
Protein
Download Length: 175 a.a. Molecular weight: 19144.68 Da Isoelectric Point: 4.7512
>NTDB_id=410183 GRI00_RS00040 WP_002833866.1 9346..9873(+) (ssb) [Pediococcus pentosaceus strain MR001]
MINRTVLVGRLTRDPELRYTGSGAAVVTFTVAVNRQFTNSQGEREADFINCVMWRKAAENFANFTRKGSLVGIDGRIQTR
SYENQQGQRVYVTEVVAENFSLLESRSSSERRQGGENNFGNNQSAPSQQPTSSGNPFDGGQSNNSGAQQPNNSNPNDPFA
NGGQSIDISDDDLPF
MINRTVLVGRLTRDPELRYTGSGAAVVTFTVAVNRQFTNSQGEREADFINCVMWRKAAENFANFTRKGSLVGIDGRIQTR
SYENQQGQRVYVTEVVAENFSLLESRSSSERRQGGENNFGNNQSAPSQQPTSSGNPFDGGQSNNSGAQQPNNSNPNDPFA
NGGQSIDISDDDLPF
Nucleotide
Download Length: 528 bp
>NTDB_id=410183 GRI00_RS00040 WP_002833866.1 9346..9873(+) (ssb) [Pediococcus pentosaceus strain MR001]
ATGATTAACCGAACAGTGCTTGTCGGACGCCTAACAAGGGACCCTGAACTACGATATACAGGTAGTGGAGCTGCAGTAGT
AACTTTTACAGTTGCTGTTAATCGTCAGTTTACTAATTCACAAGGTGAACGCGAAGCTGACTTTATTAATTGTGTTATGT
GGCGTAAAGCTGCAGAAAACTTTGCTAACTTCACTCGGAAGGGTTCATTAGTTGGTATCGACGGACGGATTCAAACCCGT
TCTTATGAAAACCAACAAGGCCAACGAGTTTATGTTACCGAGGTTGTAGCCGAAAACTTCTCTCTTCTTGAATCACGTTC
ATCTTCTGAACGTCGTCAAGGTGGAGAAAATAATTTTGGCAATAATCAATCTGCCCCTTCACAACAACCAACATCATCCG
GAAATCCATTTGACGGAGGACAATCGAATAATAGTGGTGCACAACAACCTAACAATTCGAACCCTAATGACCCATTTGCT
AATGGCGGTCAGTCAATTGATATTTCTGACGATGATTTACCATTCTAA
ATGATTAACCGAACAGTGCTTGTCGGACGCCTAACAAGGGACCCTGAACTACGATATACAGGTAGTGGAGCTGCAGTAGT
AACTTTTACAGTTGCTGTTAATCGTCAGTTTACTAATTCACAAGGTGAACGCGAAGCTGACTTTATTAATTGTGTTATGT
GGCGTAAAGCTGCAGAAAACTTTGCTAACTTCACTCGGAAGGGTTCATTAGTTGGTATCGACGGACGGATTCAAACCCGT
TCTTATGAAAACCAACAAGGCCAACGAGTTTATGTTACCGAGGTTGTAGCCGAAAACTTCTCTCTTCTTGAATCACGTTC
ATCTTCTGAACGTCGTCAAGGTGGAGAAAATAATTTTGGCAATAATCAATCTGCCCCTTCACAACAACCAACATCATCCG
GAAATCCATTTGACGGAGGACAATCGAATAATAGTGGTGCACAACAACCTAACAATTCGAACCCTAATGACCCATTTGCT
AATGGCGGTCAGTCAATTGATATTTCTGACGATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
67.582 |
100 |
0.703 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
62.286 |
100 |
0.623 |
| ssb | Glaesserella parasuis strain SC1401 |
33.871 |
100 |
0.36 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
60.571 |
0.36 |