Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GQR90_RS16600 Genome accession   NZ_CP047025
Coordinates   3912685..3913338 (-) Length   217 a.a.
NCBI ID   WP_158775058.1    Uniprot ID   -
Organism   Cobetia sp. L2A1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3907685..3918338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQR90_RS16585 - 3908093..3908860 (-) 768 WP_158775055.1 lysophospholipid acyltransferase family protein -
  GQR90_RS16590 - 3908873..3909757 (-) 885 WP_158775056.1 sugar nucleotide-binding protein -
  GQR90_RS16595 - 3909820..3912321 (-) 2502 WP_158775057.1 bifunctional diguanylate cyclase/phosphodiesterase -
  GQR90_RS16600 ssb 3912685..3913338 (-) 654 WP_158775058.1 single-stranded DNA-binding protein Machinery gene
  GQR90_RS16605 - 3913426..3914841 (-) 1416 WP_158775059.1 MFS transporter -
  GQR90_RS16610 uvrA 3915048..3917945 (+) 2898 WP_158775060.1 excinuclease ABC subunit UvrA -
  GQR90_RS17720 - 3917994..3918237 (-) 244 Protein_3234 integrase core domain-containing protein -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 23212.00 Da        Isoelectric Point: 5.2339

>NTDB_id=409971 GQR90_RS16600 WP_158775058.1 3912685..3913338(-) (ssb) [Cobetia sp. L2A1]
MARGVNKVILIGNLGQDPEVRFTPSGSAVCNLNLATTDTWNDRQSGQRQERTEWHRVVMFNKLAEVAQQYVKKGSRLYIE
GRLQTRKWQDQSGNDRYSTEIVANDMQMLDTRGEGGGGNFSGGRPQQASSQQGGNFGGQQQAASQSAATPQQGGNFGGQQ
SAQQSGNTGGQQPAPQQGGGFGGQQSSNPAQPANQQNNNFGAPPAGSFDDFDDEIPF

Nucleotide


Download         Length: 654 bp        

>NTDB_id=409971 GQR90_RS16600 WP_158775058.1 3912685..3913338(-) (ssb) [Cobetia sp. L2A1]
ATGGCTCGCGGCGTAAACAAGGTCATTTTGATCGGTAATCTCGGTCAAGACCCGGAAGTCCGTTTCACTCCGTCTGGCAG
CGCGGTATGCAACTTGAACCTCGCTACCACCGATACCTGGAATGATCGTCAGAGCGGTCAGCGTCAGGAGCGTACCGAGT
GGCATCGCGTGGTGATGTTCAACAAGTTGGCAGAGGTTGCTCAGCAGTACGTCAAAAAGGGCTCGCGCCTATACATTGAA
GGTCGTCTGCAGACGCGTAAGTGGCAGGACCAGAGCGGCAATGATCGCTACAGCACCGAGATCGTGGCTAACGATATGCA
GATGCTTGACACGCGCGGTGAAGGCGGTGGTGGTAACTTCAGTGGTGGCCGTCCGCAGCAGGCATCGTCGCAGCAAGGTG
GTAACTTCGGCGGCCAGCAGCAGGCAGCGTCACAGTCTGCCGCGACACCACAGCAGGGCGGCAACTTCGGAGGCCAACAA
TCTGCTCAGCAGAGCGGCAATACGGGTGGTCAGCAACCTGCTCCGCAGCAAGGCGGAGGCTTTGGTGGTCAGCAATCGTC
CAACCCAGCCCAGCCGGCGAATCAACAGAACAATAACTTTGGGGCGCCGCCCGCAGGCAGCTTCGATGACTTCGATGATG
AAATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.182

100

0.488
  ssb Glaesserella parasuis strain SC1401

44.393

98.618

0.438
  ssb Neisseria gonorrhoeae MS11

44.131

98.157

0.433
  ssb Neisseria meningitidis MC58

43.458

98.618

0.429

Multiple sequence alignment