Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GQR89_RS20695 Genome accession   NZ_CP047024
Coordinates   4850187..4850771 (-) Length   194 a.a.
NCBI ID   WP_158771976.1    Uniprot ID   -
Organism   Paraglaciecola sp. L1A13     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4845187..4855771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQR89_RS20675 - 4845525..4846862 (+) 1338 WP_158771973.1 DASH family cryptochrome -
  GQR89_RS20680 - 4846855..4847943 (+) 1089 WP_370460986.1 FAD-binding domain-containing protein -
  GQR89_RS21795 - 4847901..4848368 (+) 468 WP_370460987.1 FAD-binding domain-containing protein -
  GQR89_RS20685 - 4848369..4848518 (-) 150 WP_158771974.1 DUF2256 domain-containing protein -
  GQR89_RS20690 - 4848622..4850001 (-) 1380 WP_158771975.1 PepSY domain-containing protein -
  GQR89_RS20695 ssb 4850187..4850771 (-) 585 WP_158771976.1 single-stranded DNA-binding protein Machinery gene
  GQR89_RS20700 - 4851045..4852388 (-) 1344 WP_158771977.1 MFS transporter -
  GQR89_RS20705 uvrA 4852678..4855533 (+) 2856 WP_158771978.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21343.48 Da        Isoelectric Point: 5.2707

>NTDB_id=409951 GQR89_RS20695 WP_158771976.1 4850187..4850771(-) (ssb) [Paraglaciecola sp. L1A13]
MASKGVNKVILVGNLGQDPEVRYMPNGNAVANLSIATSESWKDQQGQMQERTEWHRLTMYRRLAEVAGEYLRKGSQIYVE
GKLQTRKWQDQQGQDKYTTEIIVDQMQMLGGKGGGQSEGGFQGQQRPAAAAPQQRAQNSGGQQPGYQQAPNQGYNQAPQG
GQPNQGFNQAPQGGQNKPAPMAEPDFDFDDDIPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=409951 GQR89_RS20695 WP_158771976.1 4850187..4850771(-) (ssb) [Paraglaciecola sp. L1A13]
ATGGCGAGCAAAGGCGTAAACAAAGTCATATTGGTGGGCAATTTAGGACAAGATCCTGAAGTACGTTATATGCCAAATGG
TAACGCGGTAGCGAATTTAAGCATCGCGACCAGTGAAAGCTGGAAAGACCAACAAGGGCAAATGCAAGAGCGCACCGAAT
GGCATCGCCTAACGATGTATCGCCGTTTAGCCGAAGTTGCCGGTGAATACTTACGTAAAGGTTCGCAAATTTACGTTGAA
GGTAAATTGCAAACCCGCAAATGGCAAGACCAGCAAGGTCAAGACAAGTACACCACTGAAATCATTGTCGACCAAATGCA
AATGTTGGGTGGCAAAGGCGGCGGTCAGTCCGAAGGTGGTTTTCAGGGCCAACAACGTCCCGCAGCTGCAGCCCCTCAGC
AACGCGCACAAAATTCAGGCGGCCAACAGCCAGGATATCAACAAGCACCTAACCAAGGTTACAACCAGGCTCCTCAAGGT
GGCCAACCTAACCAAGGTTTCAATCAAGCCCCACAAGGTGGTCAAAACAAACCAGCACCGATGGCTGAACCCGATTTTGA
TTTTGATGATGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.665

100

0.582
  ssb Glaesserella parasuis strain SC1401

56.771

98.969

0.562
  ssb Neisseria meningitidis MC58

45.078

99.485

0.448
  ssb Neisseria gonorrhoeae MS11

44.56

99.485

0.443

Multiple sequence alignment