Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   GQR42_RS14015 Genome accession   NZ_CP046973
Coordinates   2757091..2757456 (+) Length   121 a.a.
NCBI ID   WP_158200430.1    Uniprot ID   -
Organism   Microcystis aeruginosa FD4     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2752091..2762456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQR42_RS14000 (GQR42_14030) - 2752391..2753200 (-) 810 WP_158200427.1 squalene/phytoene synthase family protein -
  GQR42_RS14005 (GQR42_14035) - 2753470..2753694 (-) 225 WP_158200428.1 hypothetical protein -
  GQR42_RS29545 - 2753821..2753949 (-) 129 WP_257792579.1 hypothetical protein -
  GQR42_RS14010 (GQR42_14040) hmpF 2754086..2755726 (-) 1641 WP_158200429.1 pilus motility taxis protein HmpF -
  GQR42_RS14015 (GQR42_14045) pilH 2757091..2757456 (+) 366 WP_158200430.1 response regulator transcription factor Machinery gene
  GQR42_RS14020 (GQR42_14050) - 2757548..2758078 (+) 531 WP_158200431.1 chemotaxis protein CheW -
  GQR42_RS14025 (GQR42_14055) pilJ 2758172..2760835 (+) 2664 WP_158200432.1 methyl-accepting chemotaxis protein Machinery gene
  GQR42_RS14030 (GQR42_14060) - 2760905..2762086 (-) 1182 WP_158200433.1 RNA-guided endonuclease TnpB family protein -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13780.16 Da        Isoelectric Point: 5.8911

>NTDB_id=409768 GQR42_RS14015 WP_158200430.1 2757091..2757456(+) (pilH) [Microcystis aeruginosa FD4]
MSEILLVEDSQTQRELICDLLRNSGIKVTIATDGVEALEHIQRANPDLVVLDIVMPRMNGYEVCRRLKSDPKTKNVPVVI
CSLKGEVFDRYWGMKIGADAYIVKPFEPIEFIYTIKQLLRG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=409768 GQR42_RS14015 WP_158200430.1 2757091..2757456(+) (pilH) [Microcystis aeruginosa FD4]
ATGAGCGAAATATTGCTGGTAGAAGACAGCCAAACGCAACGGGAACTGATCTGTGATCTACTCCGCAATAGCGGCATTAA
GGTCACGATCGCCACGGATGGGGTGGAGGCCCTCGAACATATTCAGAGAGCCAATCCCGATCTCGTCGTCCTCGATATCG
TCATGCCCCGCATGAATGGTTATGAGGTGTGTCGTCGTCTCAAGTCGGATCCAAAAACCAAAAATGTCCCCGTGGTCATT
TGTTCCTTGAAAGGGGAAGTCTTTGATCGCTATTGGGGCATGAAAATCGGAGCCGATGCCTACATTGTCAAGCCCTTTGA
ACCGATTGAGTTCATTTATACCATTAAACAACTGCTGCGGGGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

71.667

99.174

0.711
  pilG Acinetobacter baumannii strain A118

39.13

95.041

0.372
  vicR Streptococcus mutans UA159

36.667

99.174

0.364

Multiple sequence alignment