Detailed information NTG0409638

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: GQR50_RS02110
• Genome accession: NZ_CP046954
• Coordinates: 451222..452094 (-)
• Length: 290 a.a.
• NCBI ID: WP_158196556.1
• Uniprot ID: -
• Organism: Aeromonas hydrophila strain HX-3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 446222..457094

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GQR50_RS02085 (GQR50_02085)	-	447967..449141 (+)	1175	Protein_387	tetratricopeptide repeat protein	-
GQR50_RS02090 (GQR50_02090)	mutT	449150..449563 (+)	414	WP_016352173.1	8-oxo-dGTP diphosphatase MutT	-
GQR50_RS02095 (GQR50_02095)	yacG	449624..449818 (-)	195	WP_005305661.1	DNA gyrase inhibitor YacG	-
GQR50_RS02100 (GQR50_02100)	zapD	449828..450550 (-)	723	WP_024945431.1	cell division protein ZapD	-
GQR50_RS02105 (GQR50_02105)	coaE	450588..451202 (-)	615	WP_158196555.1	dephospho-CoA kinase	-
GQR50_RS02110 (GQR50_02110)	pilD	451222..452094 (-)	873	WP_158196556.1	A24 family peptidase	Machinery gene
GQR50_RS02115 (GQR50_02115)	pilC	452117..453358 (-)	1242	WP_011707570.1	type II secretion system F family protein	Machinery gene
GQR50_RS02120 (GQR50_02120)	pilB	453474..455180 (-)	1707	WP_146061427.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
GQR50_RS02125 (GQR50_02125)	-	455184..455618 (-)	435	WP_158196557.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
GQR50_RS02130 (GQR50_02130)	nadC	455941..456798 (-)	858	WP_158196558.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32518.85 Da
• Isoelectric Point: 6.7410

>NTDB_id=409638 GQR50_RS02110 WP_158196556.1 451222..452094(-) (pilD) [Aeromonas hydrophila strain HX-3]
MLLITDVFHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYLGYFNPETQPQQEERYNLMVPRSACPHCGHA
ITAIENIPLLSWLWLKGRCRECQAPISARYPLVELLTALLSLVVAVTFPPGWGLLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL
VGAFIGIGLILLRNHHQNKPIPFGPYLAIAGWIALLWGDTITRWYLTTFL

Nucleotide

• Length: 873 bp

>NTDB_id=409638 GQR50_RS02110 WP_158196556.1 451222..452094(-) (pilD) [Aeromonas hydrophila strain HX-3]
ATGTTGCTGATCACTGACGTTTTTCACAGCCTGCCCTGGCTCTATTTCTCGCTGGTATTCCTCTTTTCTCTGATGATCGG
CAGTTTTCTCAACGTGGTCATCCATCGCCTGCCCATCATGCTGGAGCGGGAGTGGCAAGCCGAATATCTCGGCTATTTCA
ATCCAGAGACACAGCCGCAGCAGGAAGAACGCTACAACCTGATGGTGCCGCGTTCTGCCTGCCCTCATTGCGGCCACGCC
ATCACGGCCATAGAGAACATCCCCCTGCTCAGCTGGCTCTGGCTCAAGGGGCGCTGCCGTGAATGCCAGGCCCCCATCTC
GGCCCGTTATCCTCTGGTGGAGCTGCTGACGGCCCTGCTCTCGCTGGTCGTCGCAGTAACATTCCCACCGGGCTGGGGTT
TGCTGGCCGCCCTGCTGCTCACCTGGGTACTGGTGGCACTCACTTTCATCGATCTGGACAAGATGTTGCTGCCGGACCAG
CTGACCCTGCCACTGCTGTGGGGCGGCCTGCTGTTCAACCTGGCAGGGGGATTTGTACCGCTGGCCGATGCGGTGATCGG
CGCCATGGCCGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTGACCGGCAAGGAAGGCATGGGGTATG
GCGACTTCAAACTGCTGGCGGCGCTGGGCGCCTGGCTCGGCTGGCAGGCACTGCCCATCGTACTGCTGCTCTCGTCGCTG
GTTGGCGCTTTCATCGGGATTGGTCTCATTCTGCTGCGCAACCATCATCAGAACAAACCCATCCCCTTCGGCCCCTATCT
GGCTATCGCCGGCTGGATCGCACTGTTGTGGGGCGATACCATCACCCGCTGGTACCTCACGACGTTTCTCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (139-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	61.888	98.621	0.61
pilD	Vibrio campbellii strain DS40M4	56.294	98.621	0.555
pilD	Acinetobacter baumannii D1279779	54.225	97.931	0.531
pilD	Acinetobacter nosocomialis M2	54.225	97.931	0.531
pilD	Neisseria gonorrhoeae MS11	49.084	94.138	0.462