Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | GPZ88_RS05090 | Genome accession | NZ_CP046919 |
| Coordinates | 974460..975416 (+) | Length | 318 a.a. |
| NCBI ID | WP_006531743.1 | Uniprot ID | A0A380KLA4 |
| Organism | Streptococcus ruminicola strain CNU_G2 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 969460..980416
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPZ88_RS05050 (GPZ88_05015) | - | 970362..970730 (+) | 369 | WP_166043601.1 | DUF1033 family protein | - |
| GPZ88_RS05055 (GPZ88_05020) | comYA | 970800..971741 (+) | 942 | WP_166043603.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| GPZ88_RS05060 (GPZ88_05025) | comYB | 971665..972708 (+) | 1044 | WP_206282135.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| GPZ88_RS05065 (GPZ88_05030) | comGC/cglC | 972708..973001 (+) | 294 | WP_074561132.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| GPZ88_RS05070 (GPZ88_05035) | comYD | 972985..973416 (+) | 432 | WP_157628644.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| GPZ88_RS05075 (GPZ88_05040) | comYE | 973370..973663 (+) | 294 | WP_166043607.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| GPZ88_RS05080 (GPZ88_05045) | comYF | 973647..974084 (+) | 438 | WP_133018089.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| GPZ88_RS05085 (GPZ88_05050) | comGG | 974056..974406 (+) | 351 | WP_133018088.1 | competence type IV pilus minor pilin ComGG | - |
| GPZ88_RS05090 (GPZ88_05055) | comYH | 974460..975416 (+) | 957 | WP_006531743.1 | class I SAM-dependent methyltransferase | Machinery gene |
| GPZ88_RS05095 (GPZ88_05060) | - | 975470..976669 (+) | 1200 | WP_166043609.1 | acetate kinase | - |
| GPZ88_RS05100 (GPZ88_05065) | - | 976829..977026 (+) | 198 | WP_074561137.1 | helix-turn-helix transcriptional regulator | - |
| GPZ88_RS05105 (GPZ88_05070) | - | 977042..977242 (+) | 201 | WP_074965270.1 | hypothetical protein | - |
| GPZ88_RS05110 (GPZ88_05075) | - | 977243..977698 (+) | 456 | WP_240915112.1 | ABC transporter permease | - |
| GPZ88_RS05115 (GPZ88_05080) | - | 977714..978349 (+) | 636 | WP_039697423.1 | CPBP family intramembrane glutamic endopeptidase | - |
| GPZ88_RS05120 (GPZ88_05085) | proC | 978384..979154 (-) | 771 | WP_039697503.1 | pyrroline-5-carboxylate reductase | - |
| GPZ88_RS05125 (GPZ88_05090) | pepA | 979216..980283 (-) | 1068 | WP_166043611.1 | glutamyl aminopeptidase | - |
Sequence
Protein
Download Length: 318 a.a. Molecular weight: 35885.95 Da Isoelectric Point: 4.4551
>NTDB_id=409432 GPZ88_RS05090 WP_006531743.1 974460..975416(+) (comYH) [Streptococcus ruminicola strain CNU_G2]
MNFEKIETAYGLILENIQLIENELKTHIYDALIEQNSFYLGAEGANETVAANNEKLRQLDLTKEEWRRAFQFIFIKAAQT
EALQANHQFTPDAIGFILMFLIENLTASKELDVLEIGSGTGNLAQTLLNNSSKDLNYLGIEVDDLLIDLSASIAEVMDSK
AQFIQEDAVRPQILKESDVIISDLPVGFYPNDEIAKRYKVASSDEHTYAHHLLMEQSLKYLKKDGIAVFLAPVSLLTSKQ
SDLLKAWLKDYADVIAVITLPESIFGNAANAKSIFVLKKQAEHTPETFVYPLADLQSREALTDFIEKFKKWNVENMIF
MNFEKIETAYGLILENIQLIENELKTHIYDALIEQNSFYLGAEGANETVAANNEKLRQLDLTKEEWRRAFQFIFIKAAQT
EALQANHQFTPDAIGFILMFLIENLTASKELDVLEIGSGTGNLAQTLLNNSSKDLNYLGIEVDDLLIDLSASIAEVMDSK
AQFIQEDAVRPQILKESDVIISDLPVGFYPNDEIAKRYKVASSDEHTYAHHLLMEQSLKYLKKDGIAVFLAPVSLLTSKQ
SDLLKAWLKDYADVIAVITLPESIFGNAANAKSIFVLKKQAEHTPETFVYPLADLQSREALTDFIEKFKKWNVENMIF
Nucleotide
Download Length: 957 bp
>NTDB_id=409432 GPZ88_RS05090 WP_006531743.1 974460..975416(+) (comYH) [Streptococcus ruminicola strain CNU_G2]
ATGAATTTTGAAAAAATCGAAACAGCTTATGGGCTGATTCTAGAAAATATACAGTTAATCGAAAATGAGTTGAAAACACA
CATTTACGATGCTCTTATTGAACAAAACTCTTTTTATCTTGGTGCTGAAGGTGCCAATGAGACAGTAGCTGCAAATAATG
AAAAACTACGCCAACTTGATTTAACTAAAGAAGAATGGCGTCGTGCTTTTCAGTTTATTTTCATTAAAGCTGCTCAAACA
GAAGCACTTCAGGCAAACCACCAATTTACACCTGATGCTATTGGCTTTATCTTAATGTTCCTTATTGAGAATTTGACAGC
CTCAAAAGAACTTGATGTTTTAGAAATCGGTAGCGGAACAGGTAACCTTGCACAAACCTTGCTCAATAATTCATCTAAAG
ACTTGAATTACCTTGGAATTGAAGTTGATGATTTGTTGATTGACTTGTCAGCAAGTATTGCCGAAGTGATGGATTCTAAA
GCTCAGTTCATTCAAGAGGATGCTGTGCGCCCACAGATTCTTAAGGAAAGTGACGTCATCATCAGTGACCTTCCAGTCGG
CTTCTATCCAAATGATGAAATTGCAAAACGCTATAAAGTAGCAAGTAGTGATGAACACACTTATGCGCATCATTTGTTGA
TGGAACAATCTCTCAAATATCTCAAAAAAGATGGTATTGCTGTCTTTTTAGCACCGGTTAGTCTTTTGACAAGTAAACAA
AGTGATTTGTTAAAGGCATGGTTGAAGGATTACGCTGATGTTATTGCGGTGATTACTTTACCAGAATCTATTTTCGGCAA
TGCGGCCAATGCTAAGTCAATTTTTGTCTTGAAGAAACAGGCTGAACATACTCCAGAGACATTTGTTTATCCGCTTGCTG
ACTTGCAAAGTCGCGAAGCTTTAACAGATTTTATTGAGAAATTTAAAAAATGGAATGTTGAAAATATGATTTTTTAA
ATGAATTTTGAAAAAATCGAAACAGCTTATGGGCTGATTCTAGAAAATATACAGTTAATCGAAAATGAGTTGAAAACACA
CATTTACGATGCTCTTATTGAACAAAACTCTTTTTATCTTGGTGCTGAAGGTGCCAATGAGACAGTAGCTGCAAATAATG
AAAAACTACGCCAACTTGATTTAACTAAAGAAGAATGGCGTCGTGCTTTTCAGTTTATTTTCATTAAAGCTGCTCAAACA
GAAGCACTTCAGGCAAACCACCAATTTACACCTGATGCTATTGGCTTTATCTTAATGTTCCTTATTGAGAATTTGACAGC
CTCAAAAGAACTTGATGTTTTAGAAATCGGTAGCGGAACAGGTAACCTTGCACAAACCTTGCTCAATAATTCATCTAAAG
ACTTGAATTACCTTGGAATTGAAGTTGATGATTTGTTGATTGACTTGTCAGCAAGTATTGCCGAAGTGATGGATTCTAAA
GCTCAGTTCATTCAAGAGGATGCTGTGCGCCCACAGATTCTTAAGGAAAGTGACGTCATCATCAGTGACCTTCCAGTCGG
CTTCTATCCAAATGATGAAATTGCAAAACGCTATAAAGTAGCAAGTAGTGATGAACACACTTATGCGCATCATTTGTTGA
TGGAACAATCTCTCAAATATCTCAAAAAAGATGGTATTGCTGTCTTTTTAGCACCGGTTAGTCTTTTGACAAGTAAACAA
AGTGATTTGTTAAAGGCATGGTTGAAGGATTACGCTGATGTTATTGCGGTGATTACTTTACCAGAATCTATTTTCGGCAA
TGCGGCCAATGCTAAGTCAATTTTTGTCTTGAAGAAACAGGCTGAACATACTCCAGAGACATTTGTTTATCCGCTTGCTG
ACTTGCAAAGTCGCGAAGCTTTAACAGATTTTATTGAGAAATTTAAAAAATGGAATGTTGAAAATATGATTTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA140 |
68.038 |
99.371 |
0.676 |
| comYH | Streptococcus mutans UA159 |
67.722 |
99.371 |
0.673 |