Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GQA94_RS00025 Genome accession   NZ_CP046902
Coordinates   2984..3478 (-) Length   164 a.a.
NCBI ID   WP_158186157.1    Uniprot ID   A0A6I6LI27
Organism   Stutzerimonas stutzeri strain PM101005     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1..8478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQA94_RS00010 (GQA94_00010) - 399..1097 (+) 699 WP_158186154.1 OmpW family outer membrane protein -
  GQA94_RS00015 (GQA94_00015) - 1167..2096 (-) 930 WP_158186155.1 NAD-dependent epimerase/dehydratase family protein -
  GQA94_RS00020 (GQA94_00020) - 2089..2973 (-) 885 WP_158186156.1 sugar nucleotide-binding protein -
  GQA94_RS00025 (GQA94_00025) ssb 2984..3478 (-) 495 WP_158186157.1 single-stranded DNA-binding protein Machinery gene
  GQA94_RS00030 (GQA94_00030) - 3654..5021 (-) 1368 WP_158186158.1 MFS transporter -
  GQA94_RS00035 (GQA94_00035) uvrA 5153..7996 (+) 2844 WP_158186159.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18351.27 Da        Isoelectric Point: 5.2939

>NTDB_id=409211 GQA94_RS00025 WP_158186157.1 2984..3478(-) (ssb) [Stutzerimonas stutzeri strain PM101005]
MARGVNKVILIGNVGGDPETRYMPNGNAVTNITLATTDSWKDKQTGQQQERTEWHRVVLFGKVAEIAGEYLRKGSQCYIE
GRLQTREWEKDGVKRYTTEVVVDMGGTMQLLGGRGGSSDDAPRQSQPRPQRDSQPQQQSRPQSQPQPAQQPAPDYDSFDD
DIPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=409211 GQA94_RS00025 WP_158186157.1 2984..3478(-) (ssb) [Stutzerimonas stutzeri strain PM101005]
ATGGCCAGAGGGGTGAATAAAGTCATCTTGATCGGCAATGTCGGCGGCGACCCGGAAACCCGCTACATGCCCAATGGCAA
TGCGGTGACCAACATCACGCTGGCCACCACCGACAGCTGGAAGGACAAGCAGACCGGCCAGCAGCAAGAGCGCACCGAGT
GGCACCGGGTCGTGCTGTTCGGCAAGGTTGCCGAGATTGCCGGTGAGTACCTGCGCAAGGGCTCGCAGTGCTACATCGAA
GGCCGCCTGCAAACTCGCGAATGGGAAAAGGATGGCGTCAAACGCTACACCACCGAGGTGGTGGTGGACATGGGAGGCAC
CATGCAGTTGCTCGGCGGCCGTGGGGGCAGTTCCGACGATGCTCCGCGTCAGTCCCAGCCGCGCCCTCAGCGCGACTCGC
AGCCGCAGCAGCAGTCCCGTCCACAGTCTCAGCCGCAGCCTGCCCAGCAGCCAGCGCCGGACTACGACAGCTTCGACGAC
GATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I6LI27

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.742

100

0.616
  ssb Neisseria meningitidis MC58

46.154

100

0.512
  ssb Glaesserella parasuis strain SC1401

45.856

100

0.506
  ssb Neisseria gonorrhoeae MS11

44.693

100

0.488

Multiple sequence alignment