Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | GP482_RS08835 | Genome accession | NZ_CP046875 |
| Coordinates | 1770769..1771725 (+) | Length | 318 a.a. |
| NCBI ID | WP_158914703.1 | Uniprot ID | - |
| Organism | Streptococcus ruminicola strain CNU_77-61 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1765769..1776725
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GP482_RS08795 (GP482_08795) | - | 1766668..1767036 (+) | 369 | WP_074564836.1 | DUF1033 family protein | - |
| GP482_RS08800 (GP482_08800) | comYA | 1767109..1768050 (+) | 942 | WP_074603320.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| GP482_RS08805 (GP482_08805) | comYB | 1767974..1769017 (+) | 1044 | WP_174235044.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| GP482_RS08810 (GP482_08810) | comGC/cglC | 1769017..1769310 (+) | 294 | WP_074561132.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| GP482_RS08815 (GP482_08815) | comYD | 1769294..1769725 (+) | 432 | WP_158914695.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| GP482_RS08820 (GP482_08820) | comYE | 1769679..1769972 (+) | 294 | WP_158914697.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| GP482_RS08825 (GP482_08825) | comYF | 1769956..1770393 (+) | 438 | WP_158914699.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| GP482_RS08830 (GP482_08830) | comGG | 1770365..1770715 (+) | 351 | WP_158914701.1 | competence type IV pilus minor pilin ComGG | - |
| GP482_RS08835 (GP482_08835) | comYH | 1770769..1771725 (+) | 957 | WP_158914703.1 | class I SAM-dependent methyltransferase | Machinery gene |
| GP482_RS08840 (GP482_08840) | - | 1771779..1772978 (+) | 1200 | WP_158914705.1 | acetate kinase | - |
| GP482_RS08845 (GP482_08845) | - | 1773137..1773334 (+) | 198 | WP_074561137.1 | helix-turn-helix transcriptional regulator | - |
| GP482_RS08850 (GP482_08850) | - | 1773350..1773550 (+) | 201 | WP_074965270.1 | hypothetical protein | - |
| GP482_RS08855 (GP482_08855) | - | 1773551..1774006 (+) | 456 | WP_234787223.1 | ABC transporter permease | - |
| GP482_RS08860 (GP482_08860) | - | 1774021..1774656 (+) | 636 | WP_158914707.1 | type II CAAX endopeptidase family protein | - |
| GP482_RS08865 (GP482_08865) | proC | 1774692..1775462 (-) | 771 | WP_039697503.1 | pyrroline-5-carboxylate reductase | - |
| GP482_RS08870 (GP482_08870) | pepA | 1775524..1776591 (-) | 1068 | WP_158914709.1 | glutamyl aminopeptidase | - |
Sequence
Protein
Download Length: 318 a.a. Molecular weight: 35899.03 Da Isoelectric Point: 4.5418
>NTDB_id=409151 GP482_RS08835 WP_158914703.1 1770769..1771725(+) (comYH) [Streptococcus ruminicola strain CNU_77-61]
MNFEKIETAYGLILENIQLIENELKTHIYDALIEQNSFYLGAEGANETVAANNEKLRQLDLTKEEWRRAFQFIFIKAAQT
EALQANHQFTPDAIGFILMFLIENLTASKELDVLEIGSGTGNLAQTLLNNSSKDLNYLGIEVDDLLIDLSASIAEVMDSK
AQFIQEDAVRPQILKESDVIISDLPVGFYPNDEIAKRYKVASSKEHTYAHHLLMEQSLKYLKKDGIAVFLAPVSLLTSKQ
SDLLKAWLKDYADVIAVITLPESIFGNAANAKSIFVLKKQAEHTPETFVYPLADLQSREALTDFIEKFKKWNVENMIF
MNFEKIETAYGLILENIQLIENELKTHIYDALIEQNSFYLGAEGANETVAANNEKLRQLDLTKEEWRRAFQFIFIKAAQT
EALQANHQFTPDAIGFILMFLIENLTASKELDVLEIGSGTGNLAQTLLNNSSKDLNYLGIEVDDLLIDLSASIAEVMDSK
AQFIQEDAVRPQILKESDVIISDLPVGFYPNDEIAKRYKVASSKEHTYAHHLLMEQSLKYLKKDGIAVFLAPVSLLTSKQ
SDLLKAWLKDYADVIAVITLPESIFGNAANAKSIFVLKKQAEHTPETFVYPLADLQSREALTDFIEKFKKWNVENMIF
Nucleotide
Download Length: 957 bp
>NTDB_id=409151 GP482_RS08835 WP_158914703.1 1770769..1771725(+) (comYH) [Streptococcus ruminicola strain CNU_77-61]
ATGAATTTTGAAAAAATCGAAACAGCTTATGGGCTGATTCTAGAAAATATACAGTTAATCGAAAATGAGTTGAAAACACA
CATTTACGATGCACTTATTGAACAAAACTCTTTTTATCTTGGTGCTGAAGGTGCCAATGAAACAGTAGCTGCAAATAATG
AAAAACTACGCCAACTTGATTTAACTAAAGAAGAATGGCGTCGTGCTTTTCAGTTTATTTTCATTAAAGCTGCTCAAACA
GAAGCACTTCAGGCAAACCACCAATTTACACCTGATGCTATTGGCTTTATCTTAATGTTCCTTATTGAGAATTTGACAGC
CTCAAAAGAACTTGATGTTTTAGAAATCGGTAGCGGAACAGGTAACCTTGCACAAACCTTGCTCAATAATTCATCTAAAG
ACTTGAATTACCTTGGAATTGAAGTTGATGATTTGTTGATTGACTTGTCAGCAAGTATTGCCGAGGTGATGGATTCTAAA
GCTCAGTTCATTCAAGAAGATGCTGTGCGCCCACAGATTCTTAAGGAAAGTGACGTCATCATCAGTGACCTTCCAGTCGG
CTTCTATCCAAATGATGAAATTGCAAAACGCTATAAAGTAGCAAGTAGCAAAGAACACACTTATGCGCATCATTTGTTGA
TGGAACAATCTCTCAAATATCTCAAAAAAGATGGTATTGCTGTCTTTTTAGCACCGGTTAGTCTTTTGACAAGTAAACAA
AGTGATTTGTTAAAGGCATGGTTGAAGGATTACGCTGATGTTATTGCGGTGATTACTTTACCAGAATCTATTTTCGGCAA
TGCGGCCAATGCTAAGTCAATTTTTGTCTTGAAGAAACAGGCTGAACATACTCCAGAAACATTTGTTTACCCGCTTGCTG
ACTTGCAAAGTCGCGAAGCTTTAACAGATTTTATTGAGAAATTTAAAAAATGGAATGTTGAAAATATGATTTTTTAA
ATGAATTTTGAAAAAATCGAAACAGCTTATGGGCTGATTCTAGAAAATATACAGTTAATCGAAAATGAGTTGAAAACACA
CATTTACGATGCACTTATTGAACAAAACTCTTTTTATCTTGGTGCTGAAGGTGCCAATGAAACAGTAGCTGCAAATAATG
AAAAACTACGCCAACTTGATTTAACTAAAGAAGAATGGCGTCGTGCTTTTCAGTTTATTTTCATTAAAGCTGCTCAAACA
GAAGCACTTCAGGCAAACCACCAATTTACACCTGATGCTATTGGCTTTATCTTAATGTTCCTTATTGAGAATTTGACAGC
CTCAAAAGAACTTGATGTTTTAGAAATCGGTAGCGGAACAGGTAACCTTGCACAAACCTTGCTCAATAATTCATCTAAAG
ACTTGAATTACCTTGGAATTGAAGTTGATGATTTGTTGATTGACTTGTCAGCAAGTATTGCCGAGGTGATGGATTCTAAA
GCTCAGTTCATTCAAGAAGATGCTGTGCGCCCACAGATTCTTAAGGAAAGTGACGTCATCATCAGTGACCTTCCAGTCGG
CTTCTATCCAAATGATGAAATTGCAAAACGCTATAAAGTAGCAAGTAGCAAAGAACACACTTATGCGCATCATTTGTTGA
TGGAACAATCTCTCAAATATCTCAAAAAAGATGGTATTGCTGTCTTTTTAGCACCGGTTAGTCTTTTGACAAGTAAACAA
AGTGATTTGTTAAAGGCATGGTTGAAGGATTACGCTGATGTTATTGCGGTGATTACTTTACCAGAATCTATTTTCGGCAA
TGCGGCCAATGCTAAGTCAATTTTTGTCTTGAAGAAACAGGCTGAACATACTCCAGAAACATTTGTTTACCCGCTTGCTG
ACTTGCAAAGTCGCGAAGCTTTAACAGATTTTATTGAGAAATTTAAAAAATGGAATGTTGAAAATATGATTTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA140 |
68.038 |
99.371 |
0.676 |
| comYH | Streptococcus mutans UA159 |
67.722 |
99.371 |
0.673 |