Detailed information NTG0409150

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: GP482_RS08825
• Genome accession: NZ_CP046875
• Coordinates: 1769956..1770393 (+)
• Length: 145 a.a.
• NCBI ID: WP_158914699.1
• Uniprot ID: -
• Organism: Streptococcus ruminicola strain CNU_77-61
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1764956..1775393

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GP482_RS08795 (GP482_08795)	-	1766668..1767036 (+)	369	WP_074564836.1	DUF1033 family protein	-
GP482_RS08800 (GP482_08800)	comYA	1767109..1768050 (+)	942	WP_074603320.1	competence type IV pilus ATPase ComGA	Machinery gene
GP482_RS08805 (GP482_08805)	comYB	1767974..1769017 (+)	1044	WP_174235044.1	competence type IV pilus assembly protein ComGB	Machinery gene
GP482_RS08810 (GP482_08810)	comGC/cglC	1769017..1769310 (+)	294	WP_074561132.1	competence type IV pilus major pilin ComGC	Machinery gene
GP482_RS08815 (GP482_08815)	comYD	1769294..1769725 (+)	432	WP_158914695.1	competence type IV pilus minor pilin ComGD	Machinery gene
GP482_RS08820 (GP482_08820)	comYE	1769679..1769972 (+)	294	WP_158914697.1	competence type IV pilus minor pilin ComGE	Machinery gene
GP482_RS08825 (GP482_08825)	comYF	1769956..1770393 (+)	438	WP_158914699.1	competence type IV pilus minor pilin ComGF	Machinery gene
GP482_RS08830 (GP482_08830)	comGG	1770365..1770715 (+)	351	WP_158914701.1	competence type IV pilus minor pilin ComGG	-
GP482_RS08835 (GP482_08835)	comYH	1770769..1771725 (+)	957	WP_158914703.1	class I SAM-dependent methyltransferase	Machinery gene
GP482_RS08840 (GP482_08840)	-	1771779..1772978 (+)	1200	WP_158914705.1	acetate kinase	-
GP482_RS08845 (GP482_08845)	-	1773137..1773334 (+)	198	WP_074561137.1	helix-turn-helix transcriptional regulator	-
GP482_RS08850 (GP482_08850)	-	1773350..1773550 (+)	201	WP_074965270.1	hypothetical protein	-
GP482_RS08855 (GP482_08855)	-	1773551..1774006 (+)	456	WP_234787223.1	ABC transporter permease	-
GP482_RS08860 (GP482_08860)	-	1774021..1774656 (+)	636	WP_158914707.1	type II CAAX endopeptidase family protein	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16127.43 Da
• Isoelectric Point: 8.9678

>NTDB_id=409150 GP482_RS08825 WP_158914699.1 1769956..1770393(+) (comYF) [Streptococcus ruminicola strain CNU_77-61]
MSRKIRLRAFTLLESLVALLVISGSILVYQGLTQSISSNVHYLSANQEEKWLLFSQQLRSELAGCQLDKVADNKLYVSKG
NQQLAYGLSKADDFRKTNASGQGYQPMLFGVTSSSISQDGNKVIIKLQLGSDMERCFVYTFETTS

Nucleotide

• Length: 438 bp

>NTDB_id=409150 GP482_RS08825 WP_158914699.1 1769956..1770393(+) (comYF) [Streptococcus ruminicola strain CNU_77-61]
ATGTCACGAAAAATTAGGTTAAGAGCTTTTACCCTTTTAGAGAGCTTAGTGGCTTTGCTGGTTATCTCAGGTTCCATATT
GGTTTATCAAGGATTGACTCAAAGCATTTCAAGTAATGTCCATTATTTATCGGCGAATCAAGAGGAAAAATGGTTGCTCT
TTTCTCAGCAGCTGCGTTCTGAACTTGCGGGTTGTCAGTTGGATAAAGTTGCTGACAACAAACTCTATGTTAGTAAAGGT
AATCAGCAATTGGCTTATGGCTTGTCTAAGGCTGATGATTTTCGAAAAACAAATGCTTCAGGTCAGGGGTATCAGCCCAT
GCTCTTTGGCGTGACGTCATCTAGCATCAGTCAGGATGGCAATAAGGTGATAATTAAACTGCAATTAGGCAGTGATATGG
AGAGATGTTTTGTTTACACTTTTGAGACGACAAGTTAA

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (39-129)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA140	58.993	95.862	0.566
comYF	Streptococcus mutans UA159	58.273	95.862	0.559
comGF	Lactococcus lactis subsp. cremoris KW2	45.39	97.241	0.441
comGF/cglF	Streptococcus pneumoniae R6	45.39	97.241	0.441
comGF/cglF	Streptococcus pneumoniae TIGR4	45.39	97.241	0.441
comGF/cglF	Streptococcus pneumoniae Rx1	45.39	97.241	0.441
comGF/cglF	Streptococcus pneumoniae D39	45.39	97.241	0.441
comGF/cglF	Streptococcus mitis NCTC 12261	43.056	99.31	0.428
comGF/cglF	Streptococcus mitis SK321	42.361	99.31	0.421