Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD/comD1   Type   Regulator
Locus tag   GP482_RS07055 Genome accession   NZ_CP046875
Coordinates   1446220..1447539 (-) Length   439 a.a.
NCBI ID   WP_158914539.1    Uniprot ID   A0AAE6R618
Organism   Streptococcus ruminicola strain CNU_77-61     
Function   phosphorylation of ComE (predicted from homology)   
Competence regulation

Genomic Context

Location: 1441220..1452539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GP482_RS07025 (GP482_07025) comD/comD3 1442087..1443460 (-) 1374 WP_254058924.1 GHKL domain-containing protein Regulator
  GP482_RS09650 comD/comD3 1443453..1444244 (-) 792 WP_240187156.1 GHKL domain-containing protein Regulator
  GP482_RS07035 (GP482_07035) - 1444994..1445287 (-) 294 WP_158914536.1 bacteriocin immunity protein -
  GP482_RS07040 (GP482_07040) - 1445315..1445620 (-) 306 WP_158914537.1 bacteriocin immunity protein -
  GP482_RS07045 (GP482_07045) - 1445633..1445782 (-) 150 WP_039696228.1 hypothetical protein -
  GP482_RS07050 (GP482_07050) comC/comC1 1446045..1446197 (+) 153 WP_158914538.1 hypothetical protein Regulator
  GP482_RS07055 (GP482_07055) comD/comD1 1446220..1447539 (-) 1320 WP_158914539.1 GHKL domain-containing protein Regulator
  GP482_RS07060 (GP482_07060) comE/comE1 1447544..1448275 (-) 732 WP_158914540.1 response regulator transcription factor Regulator
  GP482_RS07065 (GP482_07065) - 1448780..1449391 (-) 612 WP_254058925.1 thioredoxin family protein -
  GP482_RS07070 (GP482_07070) - 1449581..1449892 (-) 312 WP_061408660.1 hypothetical protein -
  GP482_RS07075 (GP482_07075) - 1449958..1450191 (-) 234 WP_158914541.1 ComC/BlpC family peptide pheromone/bacteriocin -

Sequence

Protein


Download         Length: 439 a.a.        Molecular weight: 51037.50 Da        Isoelectric Point: 5.0910

>NTDB_id=409133 GP482_RS07055 WP_158914539.1 1446220..1447539(-) (comD/comD1) [Streptococcus ruminicola strain CNU_77-61]
MIKVSLMGYLVEAFYYPVIMIIYSNIRGVKLKLWEIVAISLSFLVIDFTCFYTIVFRFLVLEFLSYTRDKDLPLSLHIFY
ASFPWVIESIFKRLIGFFIFPIFGSGYADLGNNLVYITVEASVVLLYFVLINLSEIDFQSFIELSEIKDLRKKLIFTDIT
MIFYYIMVEFLAGVEAYGGVNNLIYRQWLVVIYFIFFILMLFYMNRSYQNRLEKEIASAREQELRYLSAYSKKVEGLYEE
LRAFRHDYANILVSLKEGIDQDDMGIVRKIYDSVLEESADFIQNSKFNISRLANIKDDAIKSLLSAKFLEAEANHIEVNL
EVKDKIGVPDIPLLDYIRLLAILCDNAIEAALEAENPAITIACFYQDDDYVLIVDNTTKEESVPVNLIYQKDYSSKGHGR
GIGLTTIHQMMRKYPNLTVQTNSKNYHFCQTIRIKKAFD

Nucleotide


Download         Length: 1320 bp        

>NTDB_id=409133 GP482_RS07055 WP_158914539.1 1446220..1447539(-) (comD/comD1) [Streptococcus ruminicola strain CNU_77-61]
ATGATAAAAGTGAGTTTAATGGGTTATCTTGTTGAAGCATTTTATTATCCTGTCATTATGATAATATATTCAAATATTAG
AGGGGTTAAATTAAAATTATGGGAAATTGTAGCGATATCATTATCGTTTCTGGTTATTGATTTTACCTGCTTTTATACAA
TTGTCTTTAGGTTTTTGGTCTTAGAGTTTTTATCATACACGAGAGATAAAGATTTGCCTCTATCTTTACATATATTTTAT
GCTAGTTTTCCATGGGTAATAGAAAGTATCTTTAAAAGATTAATAGGTTTCTTTATTTTTCCTATTTTTGGTTCAGGTTA
TGCGGATTTAGGAAATAATTTGGTGTATATAACTGTTGAAGCATCTGTCGTTTTGCTTTACTTTGTGCTAATTAATCTTT
CGGAAATAGATTTTCAATCCTTTATCGAATTAAGTGAAATAAAAGATTTACGAAAAAAATTAATTTTTACTGATATAACG
ATGATTTTTTATTATATTATGGTCGAATTTTTGGCTGGGGTGGAAGCTTATGGAGGTGTTAATAATTTAATCTATCGACA
ATGGCTAGTAGTCATTTACTTCATTTTCTTTATTTTAATGTTATTTTACATGAACCGTTCTTATCAAAATAGACTTGAAA
AAGAGATTGCCAGTGCTCGTGAGCAAGAGCTAAGATATTTATCAGCTTACAGCAAGAAGGTTGAGGGGCTATATGAGGAG
TTACGCGCCTTTCGTCATGATTATGCCAATATTTTGGTCAGCTTAAAAGAGGGAATTGATCAAGATGATATGGGGATAGT
CCGAAAAATCTACGATTCTGTTCTAGAGGAGTCGGCGGATTTTATTCAAAATAGTAAATTTAATATTAGTCGTCTAGCCA
ATATCAAAGACGATGCTATAAAAAGTCTCTTATCTGCTAAATTTTTAGAAGCAGAAGCCAATCATATTGAGGTTAATTTA
GAGGTTAAAGATAAGATTGGAGTACCAGATATTCCGCTACTAGATTATATTCGTTTGTTGGCTATTTTATGTGATAATGC
CATTGAAGCAGCGCTTGAAGCAGAAAATCCAGCTATTACTATTGCTTGTTTTTATCAAGATGATGACTATGTGCTAATTG
TAGATAATACGACTAAGGAAGAAAGTGTTCCAGTTAATTTGATTTATCAAAAAGATTATTCAAGTAAAGGACATGGTCGA
GGTATTGGTCTTACAACGATTCATCAGATGATGCGAAAATATCCTAATCTTACTGTTCAAACAAATAGTAAAAATTACCA
TTTTTGCCAAACCATACGTATTAAAAAAGCATTCGATTAA

Domains

Predicted by InterproScan.

GHKL domain (HATPase_c_5)

(334-434)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD/comD1 Streptococcus equinus JB1

92.672

52.847

0.49

Multiple sequence alignment