Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD/comD3   Type   Regulator
Locus tag   GP482_RS07025 Genome accession   NZ_CP046875
Coordinates   1442087..1443460 (-) Length   457 a.a.
NCBI ID   WP_254058924.1    Uniprot ID   -
Organism   Streptococcus ruminicola strain CNU_77-61     
Function   phosphorylation of ComE (predicted from homology)   
Competence regulation

Genomic Context

Location: 1437087..1448460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GP482_RS07000 (GP482_07000) - 1438207..1438839 (-) 633 WP_158914532.1 thiamine diphosphokinase -
  GP482_RS07005 (GP482_07005) rpe 1438832..1439494 (-) 663 WP_006531895.1 ribulose-phosphate 3-epimerase -
  GP482_RS07010 (GP482_07010) rsgA 1439501..1440373 (-) 873 WP_006531894.1 ribosome small subunit-dependent GTPase A -
  GP482_RS07020 (GP482_07020) comE/comE2 1440691..1441425 (-) 735 WP_158914534.1 LytTR family DNA-binding domain-containing protein Regulator
  GP482_RS07025 (GP482_07025) comD/comD3 1442087..1443460 (-) 1374 WP_254058924.1 GHKL domain-containing protein Regulator
  GP482_RS09650 comD/comD3 1443453..1444244 (-) 792 WP_240187156.1 GHKL domain-containing protein Regulator
  GP482_RS07035 (GP482_07035) - 1444994..1445287 (-) 294 WP_158914536.1 bacteriocin immunity protein -
  GP482_RS07040 (GP482_07040) - 1445315..1445620 (-) 306 WP_158914537.1 bacteriocin immunity protein -
  GP482_RS07045 (GP482_07045) - 1445633..1445782 (-) 150 WP_039696228.1 hypothetical protein -
  GP482_RS07050 (GP482_07050) comC/comC1 1446045..1446197 (+) 153 WP_158914538.1 hypothetical protein Regulator
  GP482_RS07055 (GP482_07055) comD/comD1 1446220..1447539 (-) 1320 WP_158914539.1 GHKL domain-containing protein Regulator
  GP482_RS07060 (GP482_07060) comE/comE1 1447544..1448275 (-) 732 WP_158914540.1 response regulator transcription factor Regulator

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 52114.99 Da        Isoelectric Point: 6.0705

>NTDB_id=409131 GP482_RS07025 WP_254058924.1 1442087..1443460(-) (comD/comD3) [Streptococcus ruminicola strain CNU_77-61]
MDNLIIIFGLLVNFIGFIILGILFQQITKVKITFLEWVLIIIFVQTGSFLMDPKKCSTVILVLIKDISVIFCLISLSLRH
NPKIGIRYHIFYALYPINLYMILQGVYGYGILALFSIKLNPISMASASLGVIVGTITAVIIPPIFYYLVSNWLNIDISNV
RKTLKNYLSARALRLVNVALLIFYPGMECFAALTPFEDMSTNRDIYRAVIFVYFIFLFIFLFYLNFRHGQEQKNELLRNQ
EMELVALENYSKHVESLYQEVRSFRHDYANVLMSLKMGIDQGNLDDIKKIYEEITADSTKLVKNNKFDLTRLANIADSGV
KSLMSAKFLQAENQGIAISLEVSEKMGNPSIPLISYIRILSILFDNAIEGALESAEPKISVANFYQDGDFVFMIENSIKE
KSVDLTKIFERGYSTKGDNRGLGLATLMDFQDDYENLSVETRSSDYTFTQVVRIFEA

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=409131 GP482_RS07025 WP_254058924.1 1442087..1443460(-) (comD/comD3) [Streptococcus ruminicola strain CNU_77-61]
TTGGATAATTTAATAATTATTTTTGGCCTTTTGGTTAATTTTATAGGTTTTATTATATTAGGAATTTTATTTCAACAGAT
AACAAAGGTTAAAATAACGTTTTTAGAGTGGGTATTGATAATAATATTTGTTCAAACTGGTTCATTTTTAATGGACCCTA
AAAAATGCTCGACGGTTATTTTAGTACTAATAAAAGATATTTCAGTGATTTTTTGTTTAATCTCACTTTCATTACGCCAT
AATCCTAAAATAGGGATAAGATATCATATTTTTTATGCTTTGTATCCGATTAATCTTTATATGATTTTACAGGGAGTTTA
TGGCTATGGTATATTAGCACTCTTTTCAATAAAATTGAACCCAATTTCAATGGCTTCAGCATCGTTAGGAGTTATAGTTG
GTACAATAACTGCAGTTATCATTCCACCGATTTTTTACTATTTAGTTTCAAACTGGTTAAACATTGATATTTCAAATGTT
CGAAAAACGCTTAAAAATTACCTTAGTGCAAGAGCACTTAGGCTTGTTAATGTTGCTTTGTTGATTTTTTATCCAGGAAT
GGAATGTTTTGCAGCACTAACGCCTTTTGAGGATATGTCAACGAATAGAGATATTTATAGAGCAGTTATCTTCGTCTACT
TTATTTTTCTCTTTATCTTCCTCTTTTACCTTAATTTCCGTCATGGGCAAGAGCAAAAAAATGAATTGCTTCGCAATCAG
GAGATGGAATTGGTGGCCTTGGAAAATTATAGCAAGCACGTGGAAAGTTTGTATCAGGAAGTTAGAAGCTTTAGGCATGA
TTATGCTAACGTCCTGATGAGTTTAAAAATGGGGATTGACCAAGGCAATCTTGATGACATCAAAAAAATTTACGAAGAAA
TCACGGCCGATTCGACGAAACTGGTCAAAAATAATAAATTTGACCTGACTCGCTTGGCTAACATCGCAGACAGCGGCGTC
AAAAGTCTCATGTCAGCTAAGTTTTTGCAAGCTGAAAATCAAGGGATTGCAATTAGTTTAGAAGTATCAGAAAAAATGGG
AAATCCTAGCATTCCATTGATTTCCTATATTCGAATTTTGTCGATTCTATTTGACAATGCCATAGAAGGAGCTTTGGAAT
CTGCGGAGCCAAAAATCTCAGTCGCTAACTTTTACCAAGATGGTGATTTTGTTTTCATGATTGAGAATTCGATTAAGGAA
AAATCGGTGGATTTAACTAAGATTTTTGAGCGTGGCTATTCAACCAAGGGAGATAATCGCGGCCTTGGCCTAGCAACGTT
AATGGATTTTCAAGATGACTACGAAAATTTGTCGGTTGAAACCCGCAGTTCAGATTACACATTTACACAAGTTGTCCGAA
TTTTTGAGGCATAA

Domains

Predicted by InterproScan.

GHKL domain (HATPase_c_5)

(357-454)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD/comD3 Streptococcus equinus JB1

83.48

99.344

0.829
  comD/comD2 Streptococcus equinus JB1

80.449

68.271

0.549

Multiple sequence alignment