Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | GPM17_RS02570 | Genome accession | NZ_CP046872 |
| Coordinates | 575209..575754 (+) | Length | 181 a.a. |
| NCBI ID | WP_003255446.1 | Uniprot ID | I7CBQ6 |
| Organism | Pseudomonas putida strain MX-2 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 570209..580754
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPM17_RS02555 (GPM17_02560) | bfr | 570304..570768 (+) | 465 | WP_003255449.1 | bacterioferritin | - |
| GPM17_RS02560 (GPM17_02565) | uvrA | 570841..573675 (-) | 2835 | WP_003255448.1 | excinuclease ABC subunit UvrA | - |
| GPM17_RS02565 (GPM17_02570) | - | 573805..575199 (+) | 1395 | WP_003255447.1 | MFS transporter | - |
| GPM17_RS02570 (GPM17_02575) | ssb | 575209..575754 (+) | 546 | WP_003255446.1 | single-stranded DNA-binding protein | Machinery gene |
| GPM17_RS02575 (GPM17_02580) | - | 575845..577227 (-) | 1383 | WP_003255445.1 | PLP-dependent aminotransferase family protein | - |
| GPM17_RS02580 (GPM17_02585) | - | 577428..578213 (+) | 786 | WP_047605319.1 | TSUP family transporter | - |
| GPM17_RS02585 (GPM17_02590) | - | 578235..578996 (+) | 762 | WP_185279919.1 | SDR family NAD(P)-dependent oxidoreductase | - |
Sequence
Protein
Download Length: 181 a.a. Molecular weight: 20059.16 Da Isoelectric Point: 5.9286
>NTDB_id=409039 GPM17_RS02570 WP_003255446.1 575209..575754(+) (ssb) [Pseudomonas putida strain MX-2]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQCYIE
GKLQTREWEKDGIKRYTTEIIVDINGTMQLLGGRPQGQQQGGDPYNQGGGNYGGGQQQQYNQAPPRQQAQRPQQAPQRPA
PQQPAPQPAADFDSFDDDIPF
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQCYIE
GKLQTREWEKDGIKRYTTEIIVDINGTMQLLGGRPQGQQQGGDPYNQGGGNYGGGQQQQYNQAPPRQQAQRPQQAPQRPA
PQQPAPQPAADFDSFDDDIPF
Nucleotide
Download Length: 546 bp
>NTDB_id=409039 GPM17_RS02570 WP_003255446.1 575209..575754(+) (ssb) [Pseudomonas putida strain MX-2]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGTACCTGTGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGT
GGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCTGGCGAGTACCTGCGCAAGGGTTCGCAGTGCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAGATCATCGTCGACATCAACGGCAC
CATGCAGCTGCTCGGCGGTCGTCCGCAAGGCCAGCAGCAGGGCGGCGACCCGTACAACCAGGGTGGCGGCAATTACGGTG
GCGGCCAGCAGCAACAGTACAACCAGGCACCGCCACGCCAGCAGGCCCAGCGCCCGCAGCAGGCCCCTCAGCGCCCAGCG
CCGCAACAGCCTGCGCCGCAGCCGGCGGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGA
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGTACCTGTGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGT
GGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCTGGCGAGTACCTGCGCAAGGGTTCGCAGTGCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAGATCATCGTCGACATCAACGGCAC
CATGCAGCTGCTCGGCGGTCGTCCGCAAGGCCAGCAGCAGGGCGGCGACCCGTACAACCAGGGTGGCGGCAATTACGGTG
GCGGCCAGCAGCAACAGTACAACCAGGCACCGCCACGCCAGCAGGCCCAGCGCCCGCAGCAGGCCCCTCAGCGCCCAGCG
CCGCAACAGCCTGCGCCGCAGCCGGCGGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
56.831 |
100 |
0.575 |
| ssb | Glaesserella parasuis strain SC1401 |
47.12 |
100 |
0.497 |
| ssb | Neisseria meningitidis MC58 |
48.634 |
100 |
0.492 |
| ssb | Neisseria gonorrhoeae MS11 |
48.634 |
100 |
0.492 |