Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   GO175_RS02180 Genome accession   NZ_CP046855
Coordinates   356461..357330 (+) Length   289 a.a.
NCBI ID   WP_158147900.1    Uniprot ID   -
Organism   Vibrio fluvialis strain F8658     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 351461..362330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO175_RS02160 nadC 351903..352790 (+) 888 WP_061056143.1 carboxylating nicotinate-nucleotide diphosphorylase -
  GO175_RS02165 pilA 353022..353453 (+) 432 WP_154184015.1 pilin Machinery gene
  GO175_RS02170 pilB 353460..355147 (+) 1688 Protein_309 type IV-A pilus assembly ATPase PilB -
  GO175_RS02175 pilC 355183..356409 (+) 1227 WP_020332199.1 type II secretion system F family protein Machinery gene
  GO175_RS02180 pilD 356461..357330 (+) 870 WP_158147900.1 A24 family peptidase Machinery gene
  GO175_RS02185 coaE 357333..357941 (+) 609 WP_158147901.1 dephospho-CoA kinase -
  GO175_RS02190 zapD 357974..358714 (+) 741 WP_158147902.1 cell division protein ZapD -
  GO175_RS02195 yacG 358769..358966 (+) 198 WP_020332195.1 DNA gyrase inhibitor YacG -
  GO175_RS02200 parC 359017..361290 (-) 2274 WP_020332194.1 DNA topoisomerase IV subunit A -

Sequence

Protein


Download         Length: 289 a.a.        Molecular weight: 32302.36 Da        Isoelectric Point: 6.4655

>NTDB_id=408932 GO175_RS02180 WP_158147900.1 356461..357330(+) (pilD) [Vibrio fluvialis strain F8658]
MDIFNFYPWLFPTLATVLGLIIGSFLNVVIYRLPKIMEREWRQECAESFPEYHIEPPQGILTLSTPRSTCPHCDTPIRII
DNIPVLSWLLLRGKCSNCQGPISARYPLIELLTASCSLLIALQFGFSWFAVAMLFFTYTLIAATFIDFDTMLLPDQLTLP
LLWTGIALALAGISPISLQDAVIGAIAGYLSLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPIIILMSSLVGL
VFGLIQLRLQKRGIDKAFPFGPYLAIAGWLSLLFGHDIAGWYFHSVLGF

Nucleotide


Download         Length: 870 bp        

>NTDB_id=408932 GO175_RS02180 WP_158147900.1 356461..357330(+) (pilD) [Vibrio fluvialis strain F8658]
ATGGACATTTTTAATTTTTACCCCTGGCTGTTTCCTACGCTGGCGACAGTGCTGGGGTTAATTATCGGCAGTTTCCTCAA
TGTGGTGATTTATCGCCTGCCGAAAATCATGGAGCGTGAGTGGCGTCAGGAGTGTGCGGAATCCTTTCCCGAGTATCATA
TTGAACCGCCTCAGGGCATTTTAACGCTGAGCACGCCACGTTCCACCTGCCCGCATTGCGATACGCCTATCCGGATTATC
GACAACATTCCGGTACTGAGCTGGCTGTTGCTGCGTGGTAAATGCTCGAATTGTCAGGGCCCTATCAGCGCGCGTTATCC
ACTGATTGAACTGCTGACGGCTTCATGCAGCCTCTTGATTGCGCTGCAATTTGGTTTTAGCTGGTTTGCCGTTGCCATGC
TGTTCTTTACCTATACGCTGATTGCGGCAACCTTCATTGATTTCGATACGATGCTGCTGCCGGATCAGCTTACTCTGCCC
CTGCTCTGGACTGGTATTGCACTGGCATTGGCGGGCATCAGCCCGATTTCGCTACAAGATGCGGTGATTGGTGCGATAGC
GGGTTATCTGTCGTTATGGTCGGTGTACTGGCTGTTTAAGCTACTGACAGGCAAAGAAGGCATGGGCTATGGCGACTTTA
AGCTATTAGCGGCTCTCGGTGCCTGGCTGGGATGGCAGCAACTACCGATCATCATTCTGATGTCATCTCTGGTTGGACTG
GTGTTCGGCCTCATTCAACTGCGTCTGCAAAAGCGCGGCATTGATAAAGCATTTCCCTTCGGGCCTTATCTGGCGATTGC
AGGCTGGCTGTCCCTGCTGTTTGGTCATGACATTGCGGGTTGGTATTTTCATTCGGTATTAGGATTCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(135-244)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio campbellii strain DS40M4

78.819

99.654

0.785
  pilD Vibrio cholerae strain A1552

78.472

99.654

0.782
  pilD Acinetobacter baumannii D1279779

53.285

94.81

0.505
  pilD Acinetobacter nosocomialis M2

52.92

94.81

0.502
  pilD Neisseria gonorrhoeae MS11

50.929

93.08

0.474

Multiple sequence alignment