Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   GPY11_RS05565 Genome accession   NZ_CP046851
Coordinates   427084..427668 (+) Length   194 a.a.
NCBI ID   WP_005505933.1    Uniprot ID   A0A377HN88
Organism   Grimontia hollisae strain F9489     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 422084..432668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY11_RS05550 ptsG 423176..424606 (+) 1431 WP_005505939.1 PTS glucose transporter subunit IIBC -
  GPY11_RS05555 - 424701..425600 (-) 900 WP_005505937.1 lysine exporter LysO family protein -
  GPY11_RS05560 - 425720..426640 (-) 921 WP_005505935.1 HDOD domain-containing protein -
  GPY11_RS05565 tfoX 427084..427668 (+) 585 WP_005505933.1 TfoX/Sxy family DNA transformation protein Regulator
  GPY11_RS05570 dsdC 427825..428730 (+) 906 WP_005505931.1 DNA-binding transcriptional regulator DsdC -
  GPY11_RS05575 - 428967..429440 (+) 474 WP_233264433.1 TetR/AcrR family transcriptional regulator -
  GPY11_RS05580 - 429459..429839 (+) 381 WP_040529093.1 hypothetical protein -
  GPY11_RS05585 - 429883..430440 (-) 558 WP_005505923.1 hypothetical protein -
  GPY11_RS05590 - 430602..431102 (-) 501 WP_040529091.1 response regulator -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 22374.66 Da        Isoelectric Point: 6.7334

>NTDB_id=408897 GPY11_RS05565 WP_005505933.1 427084..427668(+) (tfoX) [Grimontia hollisae strain F9489]
MLEVKSGFVEYLSQFGETEKRSMFGGTGFFVSGAMFALVKEDRIYLRGNDELTQQLIDKECKKFVHVKKSSTAIVNYYDI
TDLYEAKDQGLDAMVKKSVENSVAEKEYRDSKSNKRLRDLPNLRLTIERMLKKAGVEDVDTFFSMSPEELFRKVQEAHGY
DVDVKLLWMFAGAQKGMHWTLLSEETKQQLLRAV

Nucleotide


Download         Length: 585 bp        

>NTDB_id=408897 GPY11_RS05565 WP_005505933.1 427084..427668(+) (tfoX) [Grimontia hollisae strain F9489]
GTGTTGGAAGTTAAAAGTGGCTTTGTTGAATACTTATCGCAATTTGGCGAAACGGAAAAACGCTCCATGTTTGGTGGTAC
TGGTTTTTTCGTCAGCGGAGCAATGTTCGCATTAGTCAAGGAAGATCGTATTTACTTGCGTGGTAACGACGAGTTAACGC
AGCAACTTATCGACAAAGAGTGCAAGAAGTTTGTTCATGTTAAGAAAAGCTCAACAGCAATCGTAAACTACTACGACATC
ACTGATCTCTACGAAGCGAAAGATCAGGGGTTGGACGCAATGGTAAAAAAGTCCGTAGAGAACTCGGTTGCCGAGAAAGA
ATACCGCGATTCCAAATCCAACAAACGTCTGCGCGATTTACCCAATTTGCGTTTGACCATTGAACGTATGCTCAAGAAAG
CCGGAGTCGAAGATGTTGACACTTTCTTCTCCATGAGCCCGGAAGAGCTTTTCCGTAAAGTGCAGGAAGCGCACGGTTAC
GATGTTGATGTAAAACTACTTTGGATGTTTGCCGGTGCGCAAAAAGGCATGCATTGGACATTGTTGAGCGAAGAAACTAA
ACAACAACTGCTTCGTGCTGTTTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(114-193)

TfoX N-terminal domain (TfoX_N)

(10-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A377HN88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

53.476

96.392

0.515
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

53.476

96.392

0.515
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

53.476

96.392

0.515
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

53.476

96.392

0.515
  tfoX Vibrio cholerae strain A1552

53.476

96.392

0.515
  tfoX Vibrio parahaemolyticus RIMD 2210633

54.054

95.361

0.515
  tfoX Vibrio campbellii strain DS40M4

53.514

95.361

0.51
  tfoX Aliivibrio fischeri ES114

49.485

100

0.495

Multiple sequence alignment