Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | GPY12_RS13755 | Genome accession | NZ_CP046846 |
| Coordinates | 2986815..2987405 (-) | Length | 196 a.a. |
| NCBI ID | WP_000135848.1 | Uniprot ID | A0A2J9UZ41 |
| Organism | Vibrio mimicus strain F9458 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2981815..2992405
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPY12_RS13735 | aroB | 2982742..2983827 (-) | 1086 | WP_187377492.1 | 3-dehydroquinate synthase | - |
| GPY12_RS13740 | aroK | 2983855..2984379 (-) | 525 | WP_000818614.1 | shikimate kinase AroK | - |
| GPY12_RS13745 | pilQ | 2984566..2986281 (-) | 1716 | WP_199250769.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| GPY12_RS13750 | pilP | 2986307..2986825 (-) | 519 | WP_158139643.1 | pilus assembly protein PilP | Machinery gene |
| GPY12_RS13755 | pilO | 2986815..2987405 (-) | 591 | WP_000135848.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| GPY12_RS13760 | pilN | 2987398..2987982 (-) | 585 | WP_000903043.1 | PilN domain-containing protein | Machinery gene |
| GPY12_RS13765 | pilM | 2987972..2988988 (-) | 1017 | WP_158139644.1 | type IV pilus assembly protein PilM | Machinery gene |
| GPY12_RS13770 | - | 2989130..2991607 (+) | 2478 | WP_000668749.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 196 a.a. Molecular weight: 22921.33 Da Isoelectric Point: 4.4232
>NTDB_id=408838 GPY12_RS13755 WP_000135848.1 2986815..2987405(-) (pilO) [Vibrio mimicus strain F9458]
MASFQELELDEIAEWPLLPQLLVILLLMLLIQGAGYWFYLMPKQDEIVALKQEEETVKATLRIKANKVAALPQIQAQLDE
LKERYDFLLRQLPVQKELASMLASVNQLGLDNSLTFTRIDWGERQTQEFLYRLPLNIELTGNYHDIGDFSEAIAKLPRII
NFDDVDWQRVSQESSTLHFRVKAYTYQFKQEVEDEK
MASFQELELDEIAEWPLLPQLLVILLLMLLIQGAGYWFYLMPKQDEIVALKQEEETVKATLRIKANKVAALPQIQAQLDE
LKERYDFLLRQLPVQKELASMLASVNQLGLDNSLTFTRIDWGERQTQEFLYRLPLNIELTGNYHDIGDFSEAIAKLPRII
NFDDVDWQRVSQESSTLHFRVKAYTYQFKQEVEDEK
Nucleotide
Download Length: 591 bp
>NTDB_id=408838 GPY12_RS13755 WP_000135848.1 2986815..2987405(-) (pilO) [Vibrio mimicus strain F9458]
ATGGCTAGTTTTCAAGAATTAGAATTGGATGAAATTGCAGAATGGCCACTGCTGCCTCAGCTGCTCGTTATCTTGTTGTT
GATGTTGCTAATTCAAGGCGCTGGCTATTGGTTTTATCTTATGCCCAAGCAGGATGAAATTGTGGCGTTAAAACAAGAAG
AGGAAACGGTAAAAGCGACCTTAAGGATCAAAGCCAATAAAGTAGCTGCGTTACCGCAGATCCAAGCTCAGCTAGATGAA
TTGAAAGAGCGTTATGATTTTCTATTACGACAATTACCAGTTCAAAAAGAGCTGGCCAGCATGCTTGCCTCCGTTAACCA
ACTTGGTCTCGATAATTCGCTGACCTTTACGCGTATCGACTGGGGTGAGCGCCAAACACAAGAATTCCTCTACCGTCTAC
CGCTCAATATTGAACTGACGGGTAACTATCACGATATCGGCGATTTTTCAGAGGCGATTGCCAAACTACCGCGCATCATC
AATTTCGATGATGTGGATTGGCAGCGGGTGAGCCAAGAAAGTAGCACTCTACACTTCCGGGTAAAAGCTTATACCTACCA
GTTTAAACAGGAGGTTGAAGATGAAAAATAA
ATGGCTAGTTTTCAAGAATTAGAATTGGATGAAATTGCAGAATGGCCACTGCTGCCTCAGCTGCTCGTTATCTTGTTGTT
GATGTTGCTAATTCAAGGCGCTGGCTATTGGTTTTATCTTATGCCCAAGCAGGATGAAATTGTGGCGTTAAAACAAGAAG
AGGAAACGGTAAAAGCGACCTTAAGGATCAAAGCCAATAAAGTAGCTGCGTTACCGCAGATCCAAGCTCAGCTAGATGAA
TTGAAAGAGCGTTATGATTTTCTATTACGACAATTACCAGTTCAAAAAGAGCTGGCCAGCATGCTTGCCTCCGTTAACCA
ACTTGGTCTCGATAATTCGCTGACCTTTACGCGTATCGACTGGGGTGAGCGCCAAACACAAGAATTCCTCTACCGTCTAC
CGCTCAATATTGAACTGACGGGTAACTATCACGATATCGGCGATTTTTCAGAGGCGATTGCCAAACTACCGCGCATCATC
AATTTCGATGATGTGGATTGGCAGCGGGTGAGCCAAGAAAGTAGCACTCTACACTTCCGGGTAAAAGCTTATACCTACCA
GTTTAAACAGGAGGTTGAAGATGAAAAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio cholerae strain A1552 |
92.857 |
100 |
0.929 |
| pilO | Vibrio campbellii strain DS40M4 |
70.899 |
96.429 |
0.684 |