Detailed information NTG0408822

Bioinformatically predicted

Overview

• Name: tfoX
• Type: Regulator
• Locus tag: GPY12_RS05830
• Genome accession: NZ_CP046846
• Coordinates: 1243645..1244235 (+)
• Length: 196 a.a.
• NCBI ID: WP_001005359.1
• Uniprot ID: -
• Organism: Vibrio mimicus strain F9458
• Function: master regulator of natural competence (predicted from homology) Competence regulation

Genomic Context

Location: 1238645..1249235

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY12_RS05810	panP	1238937..1240583 (-)	1647	WP_148545793.1	pyridoxal-dependent aspartate 1-decarboxylase PanP	-
GPY12_RS05815	-	1240693..1241202 (-)	510	WP_148545791.1	hypothetical protein	-
GPY12_RS05820	-	1241421..1242326 (-)	906	WP_148545789.1	lysine exporter LysO family protein	-
GPY12_RS05825	-	1242347..1243267 (-)	921	WP_000019005.1	HDOD domain-containing protein	-
GPY12_RS05830	tfoX	1243645..1244235 (+)	591	WP_001005359.1	TfoX/Sxy family DNA transformation protein	Regulator
GPY12_RS05835	-	1244305..1244859 (-)	555	WP_001232586.1	hypothetical protein	-
GPY12_RS05840	-	1245050..1245547 (-)	498	WP_001031958.1	response regulator	-
GPY12_RS05845	-	1245544..1247493 (-)	1950	WP_148545787.1	ATP-binding protein	-
GPY12_RS05850	-	1247716..1248981 (+)	1266	WP_000835826.1	DUF945 family protein	-

Sequence

Protein

• Length: 196 a.a.
• Molecular weight: 22878.05 Da
• Isoelectric Point: 6.4942

>NTDB_id=408822 GPY12_RS05830 WP_001005359.1 1243645..1244235(+) (tfoX) [Vibrio mimicus strain F9458]
MNEQQFFDYVIKFGAYQKRSMFGGIGLFQHDAMYVLVSDDRIFVRGGEELDPELVALGCEKYRHVKKQTTATVNYYDVTD
LYEQNHPELDSIIERSIQFSVNQREFQRSAASRRLRDLPNMQLTLERMVKKAGIDDVETFMSLGAPEVFNKVREAYGSDV
DVKLLWKFAGAIEGIHWKLLQEPRKRQLLESCQQRQ

Nucleotide

• Length: 591 bp

>NTDB_id=408822 GPY12_RS05830 WP_001005359.1 1243645..1244235(+) (tfoX) [Vibrio mimicus strain F9458]
ATGAATGAGCAACAGTTTTTCGACTACGTAATTAAGTTTGGCGCATACCAAAAACGCTCTATGTTTGGCGGAATTGGACT
ATTTCAACACGACGCTATGTATGTGTTGGTCAGTGATGATCGTATTTTTGTTCGCGGTGGCGAAGAACTCGATCCGGAGC
TGGTGGCTTTAGGCTGTGAAAAATATCGCCATGTAAAAAAACAGACCACGGCAACAGTAAATTATTACGATGTCACTGAT
CTCTATGAACAAAATCATCCAGAGCTAGACTCTATCATCGAACGTTCTATTCAATTTTCGGTAAATCAGCGCGAATTTCA
GCGCTCTGCTGCAAGTCGTCGTTTACGTGACTTACCAAACATGCAGCTCACTCTTGAACGTATGGTGAAAAAAGCGGGTA
TTGATGATGTCGAAACGTTTATGAGCTTAGGAGCACCAGAAGTATTTAATAAAGTGCGTGAAGCTTATGGCAGTGATGTC
GATGTGAAATTGCTATGGAAATTTGCAGGAGCGATTGAGGGCATTCATTGGAAGCTTCTGCAAGAGCCGCGTAAACGCCA
ATTGCTTGAAAGCTGTCAGCAACGTCAGTAA

Domains

Predicted by InterproScan.

• TfoX C-terminal domain (TfoX_C) (112-190)

• TfoX N-terminal domain (TfoX_N) (10-99)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
tfoX	Vibrio cholerae O1 biovar El Tor str. N16961	96.41	99.49	0.959
tfoX	Vibrio cholerae O1 biovar El Tor strain DRC-193A	96.41	99.49	0.959
tfoX	Vibrio cholerae O1 biovar El Tor strain P27459	96.41	99.49	0.959
tfoX	Vibrio cholerae O1 biovar El Tor strain E7946	96.41	99.49	0.959
tfoX	Vibrio cholerae strain A1552	96.41	99.49	0.959
tfoX	Vibrio campbellii strain DS40M4	69.43	98.469	0.684
tfoX	Vibrio parahaemolyticus RIMD 2210633	69.43	98.469	0.684
tfoX	Aliivibrio fischeri ES114	59.574	95.918	0.571