Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   GPY41_RS11105 Genome accession   NZ_CP046835
Coordinates   810565..811152 (+) Length   195 a.a.
NCBI ID   WP_017790538.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 07-2444     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 805565..816152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY41_RS11090 - 807323..807835 (-) 513 WP_011150092.1 hypothetical protein -
  GPY41_RS11095 - 808033..808938 (-) 906 WP_053542702.1 lysine exporter LysO family protein -
  GPY41_RS11100 - 809285..810205 (-) 921 WP_011150094.1 HDOD domain-containing protein -
  GPY41_RS11105 tfoX 810565..811152 (+) 588 WP_017790538.1 TfoX/Sxy family DNA transformation protein Regulator
  GPY41_RS11110 - 811479..812027 (-) 549 WP_011080648.1 hypothetical protein -
  GPY41_RS11115 - 812235..812732 (-) 498 WP_053542701.1 response regulator -
  GPY41_RS11120 - 812725..814668 (-) 1944 WP_158123245.1 ATP-binding protein -
  GPY41_RS11125 - 814858..816120 (+) 1263 WP_158123246.1 DUF945 family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22356.60 Da        Isoelectric Point: 7.5541

>NTDB_id=408625 GPY41_RS11105 WP_017790538.1 810565..811152(+) (tfoX) [Vibrio vulnificus strain 07-2444]
MDMTEQAFFDYINQFGDFQKRSMFGGIGLFAEDAMFALVSNGCYYLRGGDSLDDTFCELGCEKYRHVKKQTTATVNYYEV
SNLLDNRDGQLDRLVKQSIACSVKQRNFQKSSASRRLRDLPNMQLTLERMVKKAGIDDVETFMELGAIEVFNRVKQAYGN
DVDVKLLWKFAGAVEGIHWKLLQEPRRKQLLAACC

Nucleotide


Download         Length: 588 bp        

>NTDB_id=408625 GPY41_RS11105 WP_017790538.1 810565..811152(+) (tfoX) [Vibrio vulnificus strain 07-2444]
ATGGATATGACAGAACAAGCTTTTTTTGACTACATCAACCAATTTGGTGATTTTCAGAAACGTTCAATGTTCGGTGGTAT
CGGCCTGTTTGCGGAAGATGCCATGTTTGCATTGGTGAGTAATGGTTGCTACTACCTTCGTGGTGGAGACAGTTTGGATG
ATACTTTTTGCGAATTGGGCTGTGAGAAGTATCGCCATGTCAAAAAGCAAACCACTGCTACTGTAAATTACTACGAAGTA
TCTAATCTACTTGATAATCGAGATGGTCAGTTGGATCGTTTGGTAAAGCAGTCTATAGCGTGCTCTGTAAAGCAACGTAA
TTTCCAAAAATCATCTGCCAGTCGTCGTTTAAGAGATTTACCGAACATGCAATTAACACTTGAACGCATGGTGAAAAAAG
CAGGGATTGATGACGTTGAAACCTTTATGGAATTAGGAGCGATTGAAGTCTTTAATCGAGTTAAGCAAGCTTACGGTAAT
GACGTTGATGTCAAATTGCTATGGAAATTTGCTGGCGCGGTAGAAGGTATTCATTGGAAATTACTTCAAGAGCCCCGTCG
TAAACAACTTTTGGCTGCATGCTGCTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(114-193)

TfoX N-terminal domain (TfoX_N)

(11-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio campbellii strain DS40M4

73.711

99.487

0.733
  tfoX Vibrio parahaemolyticus RIMD 2210633

73.196

99.487

0.728
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

70.833

98.462

0.697
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

70.833

98.462

0.697
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

70.833

98.462

0.697
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

70.833

98.462

0.697
  tfoX Vibrio cholerae strain A1552

70.833

98.462

0.697
  tfoX Aliivibrio fischeri ES114

57.068

97.949

0.559

Multiple sequence alignment