Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   GPY41_RS09290 Genome accession   NZ_CP046835
Coordinates   408444..408746 (+) Length   100 a.a.
NCBI ID   WP_017420947.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 07-2444     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 403444..413746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY41_RS09275 lon 403458..405809 (+) 2352 WP_158123115.1 endopeptidase La -
  GPY41_RS09280 - 406003..406275 (+) 273 WP_013572181.1 HU family DNA-binding protein -
  GPY41_RS09285 ppiD 406452..408311 (+) 1860 WP_158123116.1 peptidylprolyl isomerase -
  GPY41_RS09290 comEA 408444..408746 (+) 303 WP_017420947.1 helix-hairpin-helix domain-containing protein Machinery gene
  GPY41_RS09295 rrtA 408793..409353 (-) 561 WP_199252203.1 rhombosortase -
  GPY41_RS09300 - 409357..409965 (+) 609 WP_158123118.1 tRNA-uridine aminocarboxypropyltransferase -
  GPY41_RS09305 - 409987..411318 (-) 1332 WP_199252204.1 anti-phage deoxyguanosine triphosphatase -
  GPY41_RS09310 yfbR 411324..411908 (-) 585 WP_017420943.1 5'-deoxynucleotidase -
  GPY41_RS09315 - 411990..413204 (-) 1215 WP_017420942.1 pyridoxal phosphate-dependent aminotransferase -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 10923.76 Da        Isoelectric Point: 9.6577

>NTDB_id=408621 GPY41_RS09290 WP_017420947.1 408444..408746(+) (comEA) [Vibrio vulnificus strain 07-2444]
MKQVFTLLAMLMAFSFPSVSFADSATKAADKYEGIEISVNINTATAEEIAMMLKGVGIKKAQQIVDFREAHGPFKTVDEL
AQVKGIGKSTIEKNQSRIKL

Nucleotide


Download         Length: 303 bp        

>NTDB_id=408621 GPY41_RS09290 WP_017420947.1 408444..408746(+) (comEA) [Vibrio vulnificus strain 07-2444]
ATGAAACAGGTATTTACCCTTTTAGCCATGCTAATGGCATTCTCTTTTCCTTCCGTTTCTTTTGCGGACTCTGCAACGAA
AGCGGCCGATAAATATGAAGGCATTGAGATTTCCGTCAACATCAACACGGCGACAGCAGAAGAAATTGCCATGATGTTAA
AAGGCGTTGGAATTAAAAAAGCTCAGCAAATTGTTGACTTTAGAGAAGCTCATGGACCGTTTAAAACGGTTGATGAGTTA
GCTCAAGTGAAAGGCATCGGTAAATCAACGATTGAGAAAAATCAGTCACGGATTAAGTTGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(38-98)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio parahaemolyticus RIMD 2210633

60

100

0.6
  comEA Vibrio campbellii strain DS40M4

55

100

0.55
  comEA Vibrio cholerae C6706

51.02

98

0.5
  comEA Vibrio cholerae strain A1552

51.02

98

0.5

Multiple sequence alignment