Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   GPY16_RS10765 Genome accession   NZ_CP046832
Coordinates   2319263..2319565 (-) Length   100 a.a.
NCBI ID   WP_038968878.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 06-2410     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2314263..2324565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY16_RS10735 - 2314283..2314570 (+) 288 WP_050923117.1 hypothetical protein -
  GPY16_RS10740 - 2314832..2315959 (+) 1128 WP_158105397.1 phospholipase D family protein -
  GPY16_RS10745 yfbR 2316308..2316685 (+) 378 WP_080729673.1 5'-deoxynucleotidase -
  GPY16_RS10750 - 2316691..2318022 (+) 1332 WP_045588802.1 anti-phage deoxyguanosine triphosphatase -
  GPY16_RS10755 - 2318044..2318652 (-) 609 WP_103196851.1 tRNA-uridine aminocarboxypropyltransferase -
  GPY16_RS10760 rrtA 2318656..2319216 (+) 561 WP_233262900.1 rhombosortase -
  GPY16_RS10765 comEA 2319263..2319565 (-) 303 WP_038968878.1 helix-hairpin-helix domain-containing protein Machinery gene
  GPY16_RS10770 ppiD 2319698..2321557 (-) 1860 WP_026130414.1 peptidylprolyl isomerase -
  GPY16_RS10775 - 2321734..2322006 (-) 273 WP_013572181.1 HU family DNA-binding protein -
  GPY16_RS10780 lon 2322200..2324551 (-) 2352 WP_038968879.1 endopeptidase La -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 10931.82 Da        Isoelectric Point: 9.6577

>NTDB_id=408603 GPY16_RS10765 WP_038968878.1 2319263..2319565(-) (comEA) [Vibrio vulnificus strain 06-2410]
MKQVITLLAMLMAFSFPSVSFADSATKAAEKYEGIEISVNINTATAEEIAMMLKGVGIKKAQQIVDFREAHGPFKTVDEL
VQVKGIGKSTIEKNQSRIKL

Nucleotide


Download         Length: 303 bp        

>NTDB_id=408603 GPY16_RS10765 WP_038968878.1 2319263..2319565(-) (comEA) [Vibrio vulnificus strain 06-2410]
ATGAAACAGGTAATTACCCTTTTAGCCATGCTAATGGCATTCTCTTTTCCTTCCGTTTCTTTTGCAGACTCTGCAACGAA
AGCAGCCGAGAAATATGAAGGCATTGAGATTTCCGTCAACATCAACACGGCAACAGCAGAAGAAATTGCCATGATGTTAA
AAGGCGTGGGTATTAAAAAAGCTCAGCAAATTGTTGACTTTAGAGAAGCTCATGGACCGTTTAAAACGGTTGATGAGTTA
GTTCAAGTGAAAGGTATCGGTAAGTCAACGATTGAGAAAAATCAGTCACGGATTAAGTTGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(38-98)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio parahaemolyticus RIMD 2210633

59

100

0.59
  comEA Vibrio campbellii strain DS40M4

54

100

0.54
  comEA Vibrio cholerae C6706

51.02

98

0.5
  comEA Vibrio cholerae strain A1552

51.02

98

0.5

Multiple sequence alignment