Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   GPY16_RS08905 Genome accession   NZ_CP046832
Coordinates   1900997..1901584 (-) Length   195 a.a.
NCBI ID   WP_011080649.1    Uniprot ID   Q7MLI1
Organism   Vibrio vulnificus strain 06-2410     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1895997..1906584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY16_RS08885 - 1896028..1897290 (-) 1263 WP_158105290.1 DUF945 family protein -
  GPY16_RS08890 - 1897480..1899423 (+) 1944 WP_046028896.1 ATP-binding protein -
  GPY16_RS08895 - 1899416..1899913 (+) 498 WP_038969579.1 response regulator -
  GPY16_RS08900 - 1900121..1900669 (+) 549 WP_011080648.1 hypothetical protein -
  GPY16_RS08905 tfoX 1900997..1901584 (-) 588 WP_011080649.1 TfoX/Sxy family DNA transformation protein Regulator
  GPY16_RS08910 - 1901944..1902864 (+) 921 WP_158105291.1 HDOD domain-containing protein -
  GPY16_RS08915 - 1903211..1904116 (+) 906 WP_017420180.1 lysine exporter LysO family protein -
  GPY16_RS08920 - 1904314..1904826 (+) 513 WP_158105292.1 hypothetical protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22355.62 Da        Isoelectric Point: 7.9321

>NTDB_id=408599 GPY16_RS08905 WP_011080649.1 1900997..1901584(-) (tfoX) [Vibrio vulnificus strain 06-2410]
MDMTEQAFFDYINQFGDFQKRSMFGGIGLFAEDAMFALVSNGCYYLRGGDSLDDTFCQLGCEKYRHVKKQTTATVNYYEV
SNLLDNRDGQLDRLVKQSIACSVKQRNFQKSSASRRLRDLPNMQLTLERMVKKAGIDDVETFMELGAIEVFNRVKQAYGN
DVDVKLLWKFAGAVEGIHWKLLQEPRRKQLLAACC

Nucleotide


Download         Length: 588 bp        

>NTDB_id=408599 GPY16_RS08905 WP_011080649.1 1900997..1901584(-) (tfoX) [Vibrio vulnificus strain 06-2410]
ATGGATATGACAGAACAAGCTTTTTTTGACTACATCAACCAATTTGGTGATTTTCAGAAACGTTCAATGTTCGGTGGTAT
CGGCCTGTTTGCGGAAGATGCTATGTTTGCATTGGTGAGTAATGGTTGCTACTACCTTCGTGGTGGAGACAGTTTGGATG
ATACTTTCTGCCAATTGGGCTGTGAGAAGTATCGTCATGTCAAAAAGCAAACCACTGCTACTGTAAATTACTACGAAGTA
TCTAATCTACTTGATAATCGAGATGGTCAGTTGGATCGTTTGGTAAAGCAGTCTATAGCGTGCTCTGTAAAGCAACGTAA
TTTCCAAAAATCATCTGCCAGCCGTCGTTTAAGAGATTTACCGAACATGCAATTAACACTTGAACGCATGGTAAAAAAAG
CAGGGATTGATGACGTTGAAACCTTTATGGAACTAGGAGCGATTGAAGTCTTTAATCGAGTTAAGCAAGCTTACGGTAAT
GACGTTGATGTCAAATTGCTATGGAAATTTGCTGGCGCGGTCGAAGGTATTCATTGGAAGTTACTTCAAGAGCCCCGTCG
TAAACAACTTTTGGCTGCATGCTGTTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(114-193)

TfoX N-terminal domain (TfoX_N)

(11-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7MLI1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio campbellii strain DS40M4

74.227

99.487

0.738
  tfoX Vibrio parahaemolyticus RIMD 2210633

73.196

99.487

0.728
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

70.833

98.462

0.697
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

70.833

98.462

0.697
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

70.833

98.462

0.697
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

70.833

98.462

0.697
  tfoX Vibrio cholerae strain A1552

70.833

98.462

0.697
  tfoX Aliivibrio fischeri ES114

56.545

97.949

0.554

Multiple sequence alignment