Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GPY55_RS09920 Genome accession   NZ_CP046831
Coordinates   179333..179863 (+) Length   176 a.a.
NCBI ID   WP_005466625.1    Uniprot ID   Q87LA3
Organism   Vibrio parahaemolyticus strain 2012AW-0224     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 174333..184863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY55_RS09910 galU 177280..178152 (-) 873 WP_005466627.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GPY55_RS09915 qstR 178410..179054 (-) 645 WP_005480993.1 LuxR C-terminal-related transcriptional regulator Regulator
  GPY55_RS09920 ssb 179333..179863 (+) 531 WP_005466625.1 single-stranded DNA-binding protein Machinery gene
  GPY55_RS09925 csrD 180104..182113 (+) 2010 WP_025442294.1 RNase E specificity factor CsrD -
  GPY55_RS09930 - 182125..183576 (+) 1452 WP_031847362.1 hypothetical protein -
  GPY55_RS09935 gspM 183573..184223 (+) 651 WP_005497276.1 type II secretion system protein GspM -
  GPY55_RS09940 - 184216..184545 (+) 330 WP_005481006.1 MSHA biogenesis protein MshK -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19563.62 Da        Isoelectric Point: 4.9269

>NTDB_id=408536 GPY55_RS09920 WP_005466625.1 179333..179863(+) (ssb) [Vibrio parahaemolyticus strain 2012AW-0224]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPAMGGQQQQQGGWGQPQQPAQQQYNAPQQQQQAPQQPQ
QQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=408536 GPY55_RS09920 WP_005466625.1 179333..179863(+) (ssb) [Vibrio parahaemolyticus strain 2012AW-0224]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCGGTAGCAAACATCACGATTGCTACTTCTGAGTCATGGCGTGACAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGTTGTTCGGTAAGTTGGCAGAAGTTGCTGGTGAATACCTGCGTAAAGGTTCACAAGTTTACGTT
GAAGGCCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGCCAAGATCGCTACTCAACAGAAGTTGTGGTTCAAGGTTT
CAATGGTGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGCGCTCCTGCAATGGGCGGTCAACAACAGCAGCAAGGCG
GTTGGGGTCAACCTCAACAACCTGCTCAGCAGCAATACAATGCACCTCAACAGCAGCAACAGGCTCCGCAGCAACCACAG
CAGCAATACAACGAGCCACCAATGGATTTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LA3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

81.006

100

0.824
  ssb Glaesserella parasuis strain SC1401

57.143

100

0.614
  ssb Neisseria meningitidis MC58

48.023

100

0.483
  ssb Neisseria gonorrhoeae MS11

48.023

100

0.483

Multiple sequence alignment