Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   SSUD12_RS02175 Genome accession   NC_017621
Coordinates   426320..426985 (+) Length   221 a.a.
NCBI ID   WP_014637535.1    Uniprot ID   -
Organism   Streptococcus suis D12     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 421320..431985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUD12_RS02150 (SSUD12_0409) - 421531..422931 (+) 1401 WP_014637530.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  SSUD12_RS02155 (SSUD12_0410) - 422933..423304 (+) 372 WP_014637531.1 S1 RNA-binding domain-containing protein -
  SSUD12_RS02160 (SSUD12_0411) cysK 423330..424256 (-) 927 WP_014637532.1 cysteine synthase A -
  SSUD12_RS02165 (SSUD12_0412) - 424346..424978 (-) 633 WP_014637533.1 YigZ family protein -
  SSUD12_RS02170 (SSUD12_0413) comFA/cflA 425035..426327 (+) 1293 WP_014637534.1 DEAD/DEAH box helicase Machinery gene
  SSUD12_RS02175 (SSUD12_0414) comFC/cflB 426320..426985 (+) 666 WP_014637535.1 ComF family protein Machinery gene
  SSUD12_RS02180 (SSUD12_0415) hpf 427062..427604 (+) 543 WP_014637536.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  SSUD12_RS02185 (SSUD12_0416) - 427666..428055 (+) 390 WP_014637537.1 hypothetical protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25863.64 Da        Isoelectric Point: 8.2726

>NTDB_id=40853 SSUD12_RS02175 WP_014637535.1 426320..426985(+) (comFC/cflB) [Streptococcus suis D12]
MSNCLLCDQAMKNKTRFSDLIFFSKEKSGTCEECFSTFEEIAEQHCPHCYKNGESESCKDCQYWQNQGKPVVHTALYQYN
QAMAHYFSRYKFQGDYVLRNIFAKKLRIALRQFPDYTIVPIPISQKRLSERGFNQVEGLLDATNIPYQSLLGKYESQKQS
SKNRAERLEAKQMFYLLDEKEVPEKILLFDDIYTTGATIQLAVELFMKIGRKEIKTFSLTR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=40853 SSUD12_RS02175 WP_014637535.1 426320..426985(+) (comFC/cflB) [Streptococcus suis D12]
ATGTCTAATTGTCTATTGTGTGATCAAGCTATGAAAAATAAAACAAGATTTTCAGATCTCATCTTCTTTAGTAAAGAAAA
ATCGGGCACCTGTGAAGAATGTTTTTCGACTTTTGAGGAAATAGCAGAGCAACACTGTCCACATTGTTATAAAAATGGAG
AATCGGAAAGTTGCAAGGATTGTCAGTACTGGCAGAATCAAGGGAAACCAGTTGTCCACACAGCTTTGTACCAATATAAT
CAAGCGATGGCACATTATTTTAGTCGCTATAAATTTCAAGGAGACTATGTTTTAAGAAATATTTTTGCTAAAAAGCTTAG
AATAGCGTTACGCCAATTTCCTGATTACACAATTGTTCCCATACCAATTAGTCAAAAACGACTATCAGAACGTGGGTTTA
ATCAAGTGGAAGGACTTTTGGATGCTACAAATATCCCCTATCAGTCCCTTCTTGGAAAGTATGAAAGCCAAAAACAATCA
TCTAAAAATCGAGCAGAGAGACTAGAAGCAAAACAGATGTTCTATCTATTAGATGAAAAAGAAGTGCCAGAAAAGATATT
ATTATTCGACGATATATACACAACAGGAGCCACAATCCAACTTGCTGTAGAACTTTTCATGAAAATCGGTAGGAAAGAAA
TCAAAACATTTTCACTAACACGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

48.624

98.643

0.48
  comFC/cflB Streptococcus pneumoniae TIGR4

48.624

98.643

0.48
  comFC/cflB Streptococcus pneumoniae Rx1

48.624

98.643

0.48
  comFC/cflB Streptococcus pneumoniae D39

48.624

98.643

0.48
  comFC/cflB Streptococcus pneumoniae R6

48.624

98.643

0.48
  comFC/cflB Streptococcus mitis NCTC 12261

48.624

98.643

0.48

Multiple sequence alignment