Detailed information NTG0408452

Bioinformatically predicted

Overview

• Name: tfoX
• Type: Regulator
• Locus tag: GPY13_RS06000
• Genome accession: NZ_CP046823
• Coordinates: 1279094..1279684 (+)
• Length: 196 a.a.
• NCBI ID: WP_001005359.1
• Uniprot ID: -
• Organism: Vibrio mimicus strain 06-2455
• Function: master regulator of natural competence (predicted from homology) Competence regulation

Genomic Context

Location: 1274094..1284684

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY13_RS05980	panP	1274387..1276033 (-)	1647	WP_000253203.1	pyridoxal-dependent aspartate 1-decarboxylase PanP	-
GPY13_RS05985	-	1276143..1276652 (-)	510	WP_000826839.1	hypothetical protein	-
GPY13_RS05990	-	1276871..1277775 (-)	905	Protein_1116	lysine exporter LysO family protein	-
GPY13_RS05995	-	1277796..1278716 (-)	921	WP_000019005.1	HDOD domain-containing protein	-
GPY13_RS06000	tfoX	1279094..1279684 (+)	591	WP_001005359.1	TfoX/Sxy family DNA transformation protein	Regulator
GPY13_RS06005	-	1279754..1280308 (-)	555	WP_001232586.1	hypothetical protein	-
GPY13_RS06010	-	1280499..1280996 (-)	498	WP_001031957.1	response regulator	-
GPY13_RS06015	-	1280993..1282942 (-)	1950	WP_001082984.1	ATP-binding protein	-
GPY13_RS06020	-	1283165..1284430 (+)	1266	WP_000835826.1	DUF945 family protein	-

Sequence

Protein

• Length: 196 a.a.
• Molecular weight: 22878.05 Da
• Isoelectric Point: 6.4942

>NTDB_id=408452 GPY13_RS06000 WP_001005359.1 1279094..1279684(+) (tfoX) [Vibrio mimicus strain 06-2455]
MNEQQFFDYVIKFGAYQKRSMFGGIGLFQHDAMYVLVSDDRIFVRGGEELDPELVALGCEKYRHVKKQTTATVNYYDVTD
LYEQNHPELDSIIERSIQFSVNQREFQRSAASRRLRDLPNMQLTLERMVKKAGIDDVETFMSLGAPEVFNKVREAYGSDV
DVKLLWKFAGAIEGIHWKLLQEPRKRQLLESCQQRQ

Nucleotide

• Length: 591 bp

>NTDB_id=408452 GPY13_RS06000 WP_001005359.1 1279094..1279684(+) (tfoX) [Vibrio mimicus strain 06-2455]
ATGAATGAGCAACAGTTTTTCGACTACGTAATTAAGTTTGGCGCATACCAAAAACGCTCTATGTTTGGCGGAATTGGACT
ATTTCAACACGACGCTATGTATGTGTTGGTCAGTGATGATCGTATTTTTGTTCGCGGTGGCGAAGAACTCGATCCGGAGC
TGGTGGCTTTAGGCTGTGAAAAATATCGCCATGTAAAAAAACAGACCACGGCAACAGTAAATTATTACGATGTCACTGAT
CTCTATGAACAAAATCATCCAGAGCTAGACTCTATCATCGAACGTTCTATTCAATTTTCGGTAAATCAGCGCGAATTTCA
GCGCTCAGCCGCAAGTCGTCGTTTACGTGACTTGCCAAACATGCAGCTCACTCTTGAACGTATGGTGAAAAAAGCGGGTA
TTGATGATGTCGAAACGTTTATGAGTTTGGGCGCACCAGAAGTATTTAATAAAGTGCGTGAAGCGTATGGCAGTGATGTC
GATGTGAAATTGCTATGGAAATTTGCAGGAGCGATTGAGGGTATTCATTGGAAGCTTCTGCAAGAGCCGCGTAAACGCCA
ATTGCTTGAAAGCTGTCAGCAACGTCAGTAA

Domains

Predicted by InterproScan.

• TfoX C-terminal domain (TfoX_C) (112-190)

• TfoX N-terminal domain (TfoX_N) (10-99)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
tfoX	Vibrio cholerae O1 biovar El Tor str. N16961	96.41	99.49	0.959
tfoX	Vibrio cholerae O1 biovar El Tor strain DRC-193A	96.41	99.49	0.959
tfoX	Vibrio cholerae O1 biovar El Tor strain P27459	96.41	99.49	0.959
tfoX	Vibrio cholerae O1 biovar El Tor strain E7946	96.41	99.49	0.959
tfoX	Vibrio cholerae strain A1552	96.41	99.49	0.959
tfoX	Vibrio campbellii strain DS40M4	69.43	98.469	0.684
tfoX	Vibrio parahaemolyticus RIMD 2210633	69.43	98.469	0.684
tfoX	Aliivibrio fischeri ES114	59.574	95.918	0.571