Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   GPX85_RS12465 Genome accession   NZ_CP046822
Coordinates   1929653..1930240 (-) Length   195 a.a.
NCBI ID   WP_158138577.1    Uniprot ID   -
Organism   Vibrio metschnikovii strain 07-2421     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1924653..1935240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX85_RS12445 - 1924765..1925691 (-) 927 WP_267902833.1 DUF945 family protein -
  GPX85_RS17655 - 1925694..1926026 (-) 333 WP_267902834.1 DUF945 family protein -
  GPX85_RS12450 - 1926212..1928146 (+) 1935 WP_154167873.1 ATP-binding protein -
  GPX85_RS12455 - 1928157..1928654 (+) 498 WP_154167871.1 response regulator -
  GPX85_RS12460 - 1928967..1929515 (+) 549 WP_158138576.1 hypothetical protein -
  GPX85_RS12465 tfoX 1929653..1930240 (-) 588 WP_158138577.1 TfoX/Sxy family DNA transformation protein Regulator
  GPX85_RS12470 - 1930593..1931513 (+) 921 WP_154167864.1 HDOD domain-containing protein -
  GPX85_RS12475 - 1931567..1932472 (+) 906 WP_158138578.1 lysine exporter LysO family protein -
  GPX85_RS12480 panP 1932676..1934328 (+) 1653 WP_158138579.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22566.06 Da        Isoelectric Point: 8.6170

>NTDB_id=408418 GPX85_RS12465 WP_158138577.1 1929653..1930240(-) (tfoX) [Vibrio metschnikovii strain 07-2421]
MSETTFFDYVIKFGDYQKRSMFGGIGLFQQEAMYALLTEGAIFLRGSEELDELLIQLGCEKFRHVKKQTTATVNYYDITQ
LFEQGYPQLDDIIQRSIFYSISQRSFQKSQASRRLRDLPNMQLTLERMVKKAGVSDVETFVKLGAPAVFSKVCKIYGSDV
DVKLLWKFAGAIEGVHWKLLQEPQKRQLLEYCQAR

Nucleotide


Download         Length: 588 bp        

>NTDB_id=408418 GPX85_RS12465 WP_158138577.1 1929653..1930240(-) (tfoX) [Vibrio metschnikovii strain 07-2421]
ATGAGTGAGACAACATTTTTTGATTATGTAATTAAGTTTGGGGACTACCAAAAACGCTCAATGTTCGGTGGTATTGGCTT
ATTTCAACAAGAAGCCATGTACGCATTGTTAACTGAGGGGGCGATTTTCCTTCGTGGTAGTGAAGAACTCGATGAATTAT
TAATCCAGTTAGGCTGTGAAAAATTCCGTCATGTGAAAAAGCAGACCACAGCAACGGTTAATTACTATGATATTACGCAA
CTTTTCGAGCAAGGTTATCCACAATTAGACGATATTATTCAACGTTCTATCTTTTATTCTATTTCGCAACGTAGTTTTCA
AAAATCGCAGGCGAGCCGTCGGTTAAGAGACTTGCCTAATATGCAATTGACTCTTGAGCGAATGGTAAAAAAAGCCGGCG
TCAGCGATGTGGAAACTTTTGTAAAACTTGGCGCTCCTGCTGTATTTAGTAAGGTTTGCAAAATTTATGGCAGTGATGTT
GATGTTAAGCTGCTGTGGAAGTTTGCTGGAGCGATTGAAGGTGTGCATTGGAAGCTACTCCAAGAGCCACAAAAACGTCA
GTTATTAGAATATTGCCAAGCTCGTTGA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(112-190)

TfoX N-terminal domain (TfoX_N)

(10-97)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

76.41

100

0.764
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

76.41

100

0.764
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

76.41

100

0.764
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

76.41

100

0.764
  tfoX Vibrio cholerae strain A1552

76.41

100

0.764
  tfoX Vibrio campbellii strain DS40M4

65.285

98.974

0.646
  tfoX Vibrio parahaemolyticus RIMD 2210633

65.285

98.974

0.646
  tfoX Aliivibrio fischeri ES114

59.043

96.41

0.569

Multiple sequence alignment