Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   H0A38_RS11575 Genome accession   NZ_CP059048
Coordinates   2355498..2356091 (-) Length   197 a.a.
NCBI ID   WP_129881202.1    Uniprot ID   -
Organism   Lactococcus lactis strain LAC460     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2350498..2361091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0A38_RS11545 (H0A38_11475) - 2350705..2350869 (-) 165 WP_003131988.1 hypothetical protein -
  H0A38_RS11550 (H0A38_11480) - 2350974..2351591 (-) 618 WP_021723261.1 AAA family ATPase -
  H0A38_RS11555 (H0A38_11485) - 2351588..2352772 (-) 1185 WP_226319351.1 ABC transporter permease -
  H0A38_RS11560 (H0A38_11490) - 2352839..2353129 (-) 291 WP_058208533.1 hypothetical protein -
  H0A38_RS11565 (H0A38_11495) - 2353349..2354233 (-) 885 WP_058203823.1 XRE/MutR family transcriptional regulator -
  H0A38_RS11570 (H0A38_11500) ruvB 2354370..2355371 (-) 1002 WP_003131994.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  H0A38_RS11575 (H0A38_11505) ruvA 2355498..2356091 (-) 594 WP_129881202.1 Holliday junction branch migration protein RuvA Machinery gene
  H0A38_RS11580 (H0A38_11510) hexB 2356204..2358174 (-) 1971 WP_058203829.1 DNA mismatch repair endonuclease MutL Machinery gene
  H0A38_RS11585 (H0A38_11515) - 2358304..2358999 (-) 696 WP_129881204.1 hypothetical protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21264.88 Da        Isoelectric Point: 7.1992

>NTDB_id=408396 H0A38_RS11575 WP_129881202.1 2355498..2356091(-) (ruvA) [Lactococcus lactis strain LAC460]
MFEYLNGKLVKISPTNIVIDVAGIGYLISVANPYAWSALMNTEVKIYVHQVIREDAHSLYGFVNEAEKALFLRLISVSGI
GPKSALAIIAAADNEGLITAIDNSDIKYLTKFPGVGKKTAMQMVLDLAGKFNATGTVGISLLDARPAGNLALEEAIEALQ
ALGYKATELKKIEKKLAQETGLTSEEYIKSALKLMMK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=408396 H0A38_RS11575 WP_129881202.1 2355498..2356091(-) (ruvA) [Lactococcus lactis strain LAC460]
ATGTTTGAATATCTTAATGGAAAATTAGTAAAAATTTCCCCAACAAATATTGTAATTGATGTAGCAGGAATTGGTTATCT
TATCAGTGTAGCTAACCCTTACGCTTGGTCTGCTTTGATGAACACAGAAGTAAAAATTTATGTTCATCAAGTCATTCGCG
AAGATGCCCACAGCCTCTATGGTTTTGTTAACGAGGCCGAAAAAGCTTTATTCTTACGTCTGATCAGCGTTTCTGGGATT
GGGCCAAAATCAGCTCTGGCCATCATTGCGGCGGCTGATAACGAAGGTTTAATCACTGCTATTGACAATAGTGATATCAA
GTATTTAACTAAATTTCCAGGAGTTGGTAAAAAAACAGCCATGCAGATGGTGCTTGATTTGGCTGGGAAATTTAATGCGA
CAGGAACTGTAGGTATTTCTCTTCTTGATGCTAGACCTGCTGGCAATCTTGCTTTGGAAGAAGCGATTGAAGCGCTGCAA
GCTTTGGGTTATAAAGCAACAGAATTGAAGAAAATTGAGAAAAAATTAGCTCAAGAAACAGGTCTGACCAGCGAAGAATA
TATCAAATCAGCCTTAAAACTTATGATGAAATAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(151-196)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

59.024

100

0.614
  ruvA Streptococcus pneumoniae D39

59.024

100

0.614
  ruvA Streptococcus pneumoniae TIGR4

60.101

100

0.604
  ruvA Bacillus subtilis subsp. subtilis str. 168

44.335

100

0.457