Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   GPX85_RS04035 Genome accession   NZ_CP046822
Coordinates   35618..36337 (+) Length   239 a.a.
NCBI ID   WP_158137474.1    Uniprot ID   -
Organism   Vibrio metschnikovii strain 07-2421     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 30618..41337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX85_RS04015 greB 30830..31306 (-) 477 WP_154169919.1 transcription elongation factor GreB -
  GPX85_RS04020 - 31541..33862 (+) 2322 WP_158137472.1 Tex family protein -
  GPX85_RS04025 - 34157..34627 (-) 471 WP_158137473.1 ATP-dependent Lon protease -
  GPX85_RS04030 bioH 34749..35525 (-) 777 WP_154169911.1 pimeloyl-ACP methyl ester esterase BioH -
  GPX85_RS04035 comF 35618..36337 (+) 720 WP_158137474.1 ComF family protein Machinery gene
  GPX85_RS04040 nfuA 36422..37012 (+) 591 WP_050782704.1 Fe-S biogenesis protein NfuA -
  GPX85_RS04045 nudE 37203..37763 (+) 561 WP_154169909.1 ADP compounds hydrolase NudE -
  GPX85_RS04050 cysQ 37772..38599 (+) 828 WP_004394385.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  GPX85_RS04055 - 38650..39408 (-) 759 WP_154169907.1 type II secretion system protein N -
  GPX85_RS04060 - 39410..39904 (-) 495 WP_040903895.1 type II secretion system protein M -
  GPX85_RS04065 gspL 39904..41130 (-) 1227 WP_199244778.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 239 a.a.        Molecular weight: 27480.69 Da        Isoelectric Point: 8.5631

>NTDB_id=408395 GPX85_RS04035 WP_158137474.1 35618..36337(+) (comF) [Vibrio metschnikovii strain 07-2421]
MSMWRDRISTITHAWLTPTCSLCHLPLEPQAQHGTCHACQAWYAPSLRCQRCGLPCLTITPQCGQCLRSPPPWQQLFCIG
DYRFPLSHTIHQLKYQRQFWQARHLAARLAECITEPAPLITCVPLHWRRQWQRGFNQSERLARPLAKHVGSQFDPHLFTR
TRSTPAQQQLTKSQREKNLSGAFQRLSIPHVNHVAIVDDVVTTGSTIRQLCDLLLEVGIERIDIYCLCRTPEPSDAFQP

Nucleotide


Download         Length: 720 bp        

>NTDB_id=408395 GPX85_RS04035 WP_158137474.1 35618..36337(+) (comF) [Vibrio metschnikovii strain 07-2421]
ATGTCAATGTGGCGAGATCGGATATCGACTATCACCCACGCTTGGCTCACGCCAACCTGCAGCTTATGCCATCTGCCTTT
AGAGCCTCAAGCGCAGCATGGTACTTGCCACGCCTGCCAAGCTTGGTATGCTCCCAGCCTTCGTTGCCAGCGCTGTGGTT
TACCTTGCCTAACCATCACTCCCCAATGTGGTCAATGCTTACGTTCCCCTCCCCCTTGGCAACAGCTGTTTTGCATCGGC
GACTACCGATTCCCATTGAGTCACACCATTCATCAACTTAAATATCAGCGTCAGTTTTGGCAAGCGCGTCATTTAGCCGC
TCGACTCGCTGAATGCATCACTGAGCCAGCTCCGCTGATCACTTGCGTCCCATTACACTGGCGCAGACAATGGCAAAGAG
GGTTTAATCAAAGCGAGCGTCTTGCTCGCCCCCTTGCCAAGCACGTAGGTAGCCAGTTTGACCCACATCTGTTTACCCGC
ACTCGATCCACTCCCGCTCAACAACAATTAACCAAATCACAGCGTGAGAAAAATTTATCTGGTGCATTTCAACGTCTATC
GATTCCACACGTTAACCATGTCGCTATCGTCGACGATGTGGTCACTACCGGTAGCACTATCCGACAATTATGTGATTTAC
TGCTTGAAGTTGGCATCGAAAGGATTGATATTTATTGCTTATGCCGCACTCCTGAGCCGAGCGATGCATTCCAGCCATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(140-232)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

60.169

98.745

0.594
  comF Vibrio campbellii strain DS40M4

46.352

97.49

0.452

Multiple sequence alignment