Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   SSUD12_RS00785 Genome accession   NC_017621
Coordinates   127388..127795 (+) Length   135 a.a.
NCBI ID   WP_014637314.1    Uniprot ID   -
Organism   Streptococcus suis D12     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 122388..132795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUD12_RS00760 (SSUD12_0121) - 123789..124154 (+) 366 WP_014637310.1 DUF1033 family protein -
  SSUD12_RS00765 (SSUD12_0122) - 124189..125139 (-) 951 WP_014637311.1 S66 peptidase family protein -
  SSUD12_RS00770 (SSUD12_0123) comGA 125225..126175 (+) 951 WP_014637312.1 competence type IV pilus ATPase ComGA Machinery gene
  SSUD12_RS00775 (SSUD12_0124) comGB 126087..127124 (+) 1038 WP_044669087.1 competence type IV pilus assembly protein ComGB Machinery gene
  SSUD12_RS00780 (SSUD12_0125) comGC 127126..127407 (+) 282 WP_002936550.1 competence type IV pilus major pilin ComGC Machinery gene
  SSUD12_RS00785 (SSUD12_0126) comGD 127388..127795 (+) 408 WP_014637314.1 competence type IV pilus minor pilin ComGD Machinery gene
  SSUD12_RS00790 (SSUD12_0127) comGE 127767..128060 (+) 294 WP_024410167.1 competence type IV pilus minor pilin ComGE Machinery gene
  SSUD12_RS00795 (SSUD12_0128) comGF/cglF 128047..128481 (+) 435 WP_014637316.1 competence type IV pilus minor pilin ComGF Machinery gene
  SSUD12_RS00800 (SSUD12_0129) comGG 128459..128869 (+) 411 WP_014637317.1 competence type IV pilus minor pilin ComGG -
  SSUD12_RS00805 (SSUD12_0130) comGH 128926..129879 (+) 954 WP_014637318.1 class I SAM-dependent methyltransferase Machinery gene
  SSUD12_RS00810 (SSUD12_0131) - 129929..131116 (+) 1188 WP_014637319.1 acetate kinase -
  SSUD12_RS00815 (SSUD12_0132) - 131377..131928 (+) 552 WP_014637320.1 folate family ECF transporter S component -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 15390.63 Da        Isoelectric Point: 9.6569

>NTDB_id=40838 SSUD12_RS00785 WP_014637314.1 127388..127795(+) (comGD) [Streptococcus suis D12]
MLRRKNKAFTLFESLLTLFVVSFLAVSLSGTVQTVFRSVQEEIFLWEFEAIYKDSQKLAASSHQKVNLAIGGQEVTNGYQ
AVEVPRNVEVLEGKTITFEEDGGNSSLTKIRFRLRQKIVTYQLYIGSGRYKKTEE

Nucleotide


Download         Length: 408 bp        

>NTDB_id=40838 SSUD12_RS00785 WP_014637314.1 127388..127795(+) (comGD) [Streptococcus suis D12]
ATGCTACGGCGAAAAAATAAGGCTTTCACCCTGTTTGAAAGCCTGCTGACCTTGTTTGTTGTCAGTTTTTTAGCTGTTTC
CCTATCAGGAACAGTACAAACGGTCTTTCGGTCTGTTCAGGAAGAAATTTTTCTCTGGGAATTTGAGGCCATCTATAAAG
ACAGTCAGAAATTGGCAGCCAGTTCCCACCAAAAAGTGAACCTTGCTATCGGTGGACAGGAAGTTACAAATGGTTATCAG
GCTGTAGAGGTACCCAGAAATGTAGAAGTATTAGAAGGGAAGACCATCACATTTGAAGAAGATGGTGGAAATTCTTCTCT
GACCAAGATTCGTTTTCGGCTTAGGCAAAAAATAGTCACGTATCAATTATATATAGGGAGTGGTCGCTATAAGAAAACAG
AAGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Streptococcus gordonii str. Challis substr. CH1

48.031

94.074

0.452
  comGD Streptococcus mutans UA159

46.512

95.556

0.444
  comGD/cglD Streptococcus pneumoniae Rx1

46.512

95.556

0.444
  comGD Streptococcus mutans UA140

46.512

95.556

0.444
  comGD/cglD Streptococcus pneumoniae R6

46.512

95.556

0.444
  comGD/cglD Streptococcus pneumoniae TIGR4

46.512

95.556

0.444
  comGD/cglD Streptococcus pneumoniae D39

46.512

95.556

0.444
  comGD/cglD Streptococcus mitis NCTC 12261

45.736

95.556

0.437
  comGD/cglD Streptococcus mitis SK321

45.736

95.556

0.437
  comGD Lactococcus lactis subsp. cremoris KW2

38.281

94.815

0.363

Multiple sequence alignment