Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DELCS14_RS28245 Genome accession   NC_015563
Coordinates   6429128..6429697 (+) Length   189 a.a.
NCBI ID   WP_013804622.1    Uniprot ID   A0A8I0MEM1
Organism   Delftia sp. Cs1-4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6424128..6434697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DELCS14_RS28235 (DelCs14_5712) uvrA 6424399..6427518 (-) 3120 WP_013804620.1 excinuclease ABC subunit UvrA -
  DELCS14_RS28240 (DelCs14_5713) - 6427792..6428967 (+) 1176 WP_043796511.1 MFS transporter -
  DELCS14_RS28245 (DelCs14_5714) ssb 6429128..6429697 (+) 570 WP_013804622.1 single-stranded DNA-binding protein Machinery gene
  DELCS14_RS30285 (DelCs14_5715) - 6429918..6430238 (+) 321 WP_013804623.1 helix-turn-helix transcriptional regulator -
  DELCS14_RS28255 (DelCs14_5716) - 6430222..6431475 (+) 1254 WP_013804624.1 type II toxin-antitoxin system HipA family toxin -
  DELCS14_RS28260 (DelCs14_5717) - 6431817..6433271 (+) 1455 WP_227472475.1 SulP family inorganic anion transporter -
  DELCS14_RS31375 - 6433668..6433976 (+) 309 WP_228676829.1 hypothetical protein -
  DELCS14_RS28270 (DelCs14_5719) - 6433979..6434671 (+) 693 WP_013804627.1 hypothetical protein -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 20543.69 Da        Isoelectric Point: 5.9554

>NTDB_id=40838 DELCS14_RS28245 WP_013804622.1 6429128..6429697(+) (ssb) [Delftia sp. Cs1-4]
MASVNKVIIVGNLGRDPEMRTFPSGDQVANVTIATTDRWRDKNTGENKEATEWHRVVFNGRLAEIVGQYLRKGSQVYVEG
SLRTRKWTDQASGQERYATEIRADSMQMLGSRQGGGGGQQGGGYGDEGYGDSGYDAPPQQQQQRRPAPAPMAAPAPRQAP
PQRPAPAPMAPPPQRAASGFDDMDDDIPF

Nucleotide


Download         Length: 570 bp        

>NTDB_id=40838 DELCS14_RS28245 WP_013804622.1 6429128..6429697(+) (ssb) [Delftia sp. Cs1-4]
ATGGCATCCGTCAACAAAGTCATCATCGTCGGCAACCTCGGACGCGACCCCGAAATGCGCACCTTCCCGAGTGGCGATCA
GGTGGCCAACGTGACCATCGCCACCACCGACCGCTGGCGCGACAAGAACACCGGCGAGAACAAGGAAGCCACCGAGTGGC
ACCGCGTGGTCTTCAACGGCCGTTTGGCCGAAATCGTGGGCCAGTACCTGCGCAAGGGCAGCCAGGTCTATGTCGAAGGC
AGCCTGCGCACGCGCAAGTGGACCGACCAGGCCAGCGGCCAGGAACGCTACGCCACCGAAATCCGTGCCGACAGCATGCA
GATGCTGGGCAGCCGCCAGGGCGGCGGCGGTGGCCAACAAGGCGGCGGCTACGGCGATGAAGGCTACGGCGACAGCGGCT
ACGACGCCCCTCCCCAGCAGCAGCAACAGCGCCGCCCGGCCCCTGCCCCCATGGCAGCGCCCGCACCGCGCCAGGCTCCT
CCCCAGCGCCCCGCTCCCGCACCCATGGCACCCCCGCCCCAGCGCGCGGCCTCGGGCTTTGACGACATGGATGACGACAT
TCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.284

100

0.545
  ssb Glaesserella parasuis strain SC1401

51.795

100

0.534
  ssb Neisseria gonorrhoeae MS11

45.789

100

0.46
  ssb Neisseria meningitidis MC58

44.737

100

0.45

Multiple sequence alignment