Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   GPX95_RS02555 Genome accession   NZ_CP046817
Coordinates   583277..583864 (-) Length   195 a.a.
NCBI ID   WP_001005361.1    Uniprot ID   A0A0Q0JLK0
Organism   Vibrio metoecus strain 06-2478     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 578277..588864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX95_RS02535 - 578506..579771 (-) 1266 WP_055028625.1 DUF945 family protein -
  GPX95_RS02540 - 579994..581937 (+) 1944 WP_055030978.1 ATP-binding protein -
  GPX95_RS02545 - 581940..582437 (+) 498 WP_055027200.1 response regulator -
  GPX95_RS02550 - 582627..583181 (+) 555 WP_001232587.1 hypothetical protein -
  GPX95_RS02555 tfoX 583277..583864 (-) 588 WP_001005361.1 TfoX/Sxy family DNA transformation protein Regulator
  GPX95_RS02560 - 584239..585159 (+) 921 WP_009355303.1 HDOD domain-containing protein -
  GPX95_RS02565 - 585182..586087 (+) 906 WP_055028629.1 lysine exporter LysO family protein -
  GPX95_RS02570 - 586274..586783 (+) 510 WP_000826840.1 hypothetical protein -
  GPX95_RS02575 panP 586893..588539 (+) 1647 WP_055030977.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22810.04 Da        Isoelectric Point: 7.3204

>NTDB_id=408299 GPX95_RS02555 WP_001005361.1 583277..583864(-) (tfoX) [Vibrio metoecus strain 06-2478]
MNEQQFFDYVNKFGAYQKRSMFGGIGLFQHDAMYVLVSEDRIFVRGGEELDPELIALGCEKYRHVKKQTTATVNYYDITD
LYEKNHPELDSIIERSIQFSVNQREFQRSAASRRLRDLPNMQLTLERMVKKAGIDDVETFMSMGAPEVFNKVRQAYGSDV
DVKLLWKFAGAIEGIHWKLLQEPRKRQLLESCQQR

Nucleotide


Download         Length: 588 bp        

>NTDB_id=408299 GPX95_RS02555 WP_001005361.1 583277..583864(-) (tfoX) [Vibrio metoecus strain 06-2478]
ATGAATGAGCAACAGTTTTTCGATTACGTAAACAAGTTTGGCGCCTACCAAAAACGCTCGATGTTTGGTGGGATTGGTTT
GTTTCAACATGATGCAATGTACGTGTTAGTCAGTGAAGATCGAATTTTTGTCCGTGGTGGCGAAGAGCTTGATCCTGAAC
TGATTGCTTTGGGATGTGAAAAATATCGCCATGTGAAGAAGCAGACAACCGCAACGGTAAACTATTACGATATCACTGAT
TTATATGAAAAAAATCACCCTGAGCTAGACTCCATTATCGAACGTTCCATCCAGTTTTCGGTGAATCAGCGTGAGTTTCA
ACGTTCAGCCGCGAGCCGTCGTTTGCGTGATCTGCCCAATATGCAGCTCACTTTAGAGCGCATGGTGAAAAAAGCGGGGA
TTGATGATGTTGAAACCTTCATGAGCATGGGTGCTCCGGAAGTGTTTAATAAAGTACGTCAAGCTTACGGTAGCGATGTG
GACGTCAAACTGCTGTGGAAATTTGCGGGAGCTATTGAAGGGATCCATTGGAAGTTGTTACAAGAGCCACGTAAGCGTCA
GCTACTTGAAAGCTGTCAGCAACGTTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(112-190)

TfoX N-terminal domain (TfoX_N)

(9-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q0JLK0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

96.923

100

0.969
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

96.923

100

0.969
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

96.923

100

0.969
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

96.923

100

0.969
  tfoX Vibrio cholerae strain A1552

96.923

100

0.969
  tfoX Vibrio campbellii strain DS40M4

68.394

98.974

0.677
  tfoX Vibrio parahaemolyticus RIMD 2210633

68.394

98.974

0.677
  tfoX Aliivibrio fischeri ES114

59.043

96.41

0.569

Multiple sequence alignment