Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   GPX87_RS11725 Genome accession   NZ_CP046815
Coordinates   2517066..2517653 (+) Length   195 a.a.
NCBI ID   WP_078924531.1    Uniprot ID   A0A1T4KBI4
Organism   Vibrio cincinnatiensis strain 1398-82     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2512066..2522653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX87_RS11705 panP 2512418..2514073 (-) 1656 WP_078924527.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -
  GPX87_RS11710 - 2514203..2514715 (-) 513 WP_078924528.1 hypothetical protein -
  GPX87_RS11715 - 2514846..2515751 (-) 906 WP_078924529.1 lysine exporter LysO family protein -
  GPX87_RS11720 - 2515772..2516692 (-) 921 WP_078924530.1 HDOD domain-containing protein -
  GPX87_RS11725 tfoX 2517066..2517653 (+) 588 WP_078924531.1 TfoX/Sxy family DNA transformation protein Regulator
  GPX87_RS11730 - 2517720..2518268 (-) 549 WP_078924532.1 hypothetical protein -
  GPX87_RS11735 - 2518658..2519155 (-) 498 WP_078924533.1 response regulator -
  GPX87_RS11740 - 2519173..2521107 (-) 1935 WP_078924534.1 ATP-binding protein -
  GPX87_RS11745 - 2521370..2522632 (+) 1263 WP_078924535.1 DUF945 family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22989.41 Da        Isoelectric Point: 7.4306

>NTDB_id=408290 GPX87_RS11725 WP_078924531.1 2517066..2517653(+) (tfoX) [Vibrio cincinnatiensis strain 1398-82]
MIEHTFFDYVIKFGAYQKRSMFGGIGLFQEDAMYVLLTEDTIFIRGSEELDQQLMDLGCEKFRHVKKQTTATVNYYDITE
LFDKRHPDLESIIRRSIQYSIEQRNFQKSQASRRLRDLPNMQLTLERMVKKAGVDDVDTFIQLGAPEVFSKVRQVYGSDV
DVKLLWKFAGAIEGVHWKLLQEPKKRQLLEYCQHH

Nucleotide


Download         Length: 588 bp        

>NTDB_id=408290 GPX87_RS11725 WP_078924531.1 2517066..2517653(+) (tfoX) [Vibrio cincinnatiensis strain 1398-82]
ATGATTGAGCATACATTTTTTGATTATGTAATTAAGTTTGGCGCTTACCAAAAGCGTTCTATGTTTGGTGGTATTGGTTT
ATTTCAAGAAGATGCCATGTATGTATTATTAACGGAAGATACGATTTTCATTCGTGGTAGTGAAGAGTTGGATCAACAGC
TTATGGACTTAGGGTGTGAGAAGTTCCGCCATGTTAAGAAGCAAACGACCGCCACGGTGAATTATTATGACATTACGGAA
CTGTTTGATAAACGCCACCCTGACCTAGAGAGTATTATTCGGCGTTCTATTCAATATTCGATAGAACAACGTAATTTTCA
AAAATCTCAGGCTAGCCGCCGTTTACGCGATTTACCGAATATGCAGTTAACTCTGGAGCGTATGGTGAAAAAAGCGGGAG
TCGATGATGTGGACACCTTTATCCAGCTTGGTGCTCCTGAAGTATTTAGCAAAGTGCGGCAAGTGTATGGTAGTGATGTT
GATGTAAAACTATTGTGGAAATTTGCTGGAGCCATTGAAGGTGTACACTGGAAGTTGTTGCAAGAACCTAAAAAACGGCA
GCTATTGGAGTATTGTCAGCACCATTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(112-190)

TfoX N-terminal domain (TfoX_N)

(10-98)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1T4KBI4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

80.412

99.487

0.8
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

80.412

99.487

0.8
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

80.412

99.487

0.8
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

80.412

99.487

0.8
  tfoX Vibrio cholerae strain A1552

80.412

99.487

0.8
  tfoX Vibrio campbellii strain DS40M4

65.803

98.974

0.651
  tfoX Vibrio parahaemolyticus RIMD 2210633

64.249

98.974

0.636
  tfoX Aliivibrio fischeri ES114

60.317

96.923

0.585

Multiple sequence alignment