Detailed information
Bioinformatically predicted
Overview
| Name | ruvA | Type | Machinery gene |
| Locus tag | SSUD12_RS00385 | Genome accession | NC_017621 |
| Coordinates | 66442..67032 (+) | Length | 196 a.a. |
| NCBI ID | WP_014637284.1 | Uniprot ID | - |
| Organism | Streptococcus suis D12 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 61442..72032
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SSUD12_RS00375 (SSUD12_0061) | - | 62834..64357 (+) | 1524 | WP_014637282.1 | Heme/copper-type cytochrome/quinol oxidase subunit 1 | - |
| SSUD12_RS00380 (SSUD12_0062) | hexB | 64475..66412 (+) | 1938 | WP_014637283.1 | DNA mismatch repair endonuclease MutL | Machinery gene |
| SSUD12_RS00385 (SSUD12_0063) | ruvA | 66442..67032 (+) | 591 | WP_014637284.1 | Holliday junction branch migration protein RuvA | Machinery gene |
| SSUD12_RS00390 (SSUD12_0064) | - | 67286..67855 (+) | 570 | WP_014637285.1 | DNA-3-methyladenine glycosylase I | - |
| SSUD12_RS00395 (SSUD12_0065) | cinA | 67892..69073 (+) | 1182 | WP_014637286.1 | competence/damage-inducible protein A | Machinery gene |
| SSUD12_RS00400 (SSUD12_0066) | recA | 69125..70276 (+) | 1152 | WP_014637287.1 | recombinase RecA | Machinery gene |
| SSUD12_RS10855 | - | 70507..71800 (-) | 1294 | Protein_62 | IS4 family transposase | - |
Sequence
Protein
Download Length: 196 a.a. Molecular weight: 21743.11 Da Isoelectric Point: 5.0727
>NTDB_id=40829 SSUD12_RS00385 WP_014637284.1 66442..67032(+) (ruvA) [Streptococcus suis D12]
MYDYIKGMLTKITAKYIVVETQGVGYILQVANPYAYSGQVQQEVTVYTHQVIREDAHLLYGFATENEKSVFLSLISVSGI
GPTTALAIIAVDDNDGLVRAIEQKNITYLTKFPKIGKKTAQQMILDLEGKFVMSEEAGPVQQVAPSSENIALDEAMEAME
ALGYRPAELKKIKKFFEGTNDTAENYIKSALKMLMK
MYDYIKGMLTKITAKYIVVETQGVGYILQVANPYAYSGQVQQEVTVYTHQVIREDAHLLYGFATENEKSVFLSLISVSGI
GPTTALAIIAVDDNDGLVRAIEQKNITYLTKFPKIGKKTAQQMILDLEGKFVMSEEAGPVQQVAPSSENIALDEAMEAME
ALGYRPAELKKIKKFFEGTNDTAENYIKSALKMLMK
Nucleotide
Download Length: 591 bp
>NTDB_id=40829 SSUD12_RS00385 WP_014637284.1 66442..67032(+) (ruvA) [Streptococcus suis D12]
ATGTACGACTATATCAAAGGAATGTTAACAAAAATCACTGCAAAATATATTGTGGTAGAAACGCAAGGGGTAGGCTATAT
CTTGCAGGTTGCTAATCCCTACGCCTATTCAGGACAAGTCCAGCAAGAAGTGACTGTCTATACTCATCAAGTGATTCGAG
AAGATGCTCATTTGCTCTATGGATTTGCTACAGAAAATGAAAAATCCGTCTTTCTGAGTCTGATTTCAGTATCAGGTATT
GGTCCAACAACAGCTCTGGCTATTATTGCTGTTGATGATAATGATGGACTTGTTCGTGCTATTGAGCAGAAAAACATTAC
CTACCTGACCAAGTTTCCAAAGATTGGCAAGAAAACAGCCCAGCAGATGATTTTGGACTTGGAAGGCAAGTTTGTCATGA
GCGAAGAAGCGGGTCCTGTTCAACAAGTAGCACCATCCAGTGAAAATATCGCTCTTGATGAAGCTATGGAAGCCATGGAA
GCCCTTGGTTACCGCCCAGCCGAACTCAAGAAAATCAAGAAATTCTTTGAAGGCACCAATGACACCGCTGAAAACTACAT
CAAGTCAGCCCTTAAAATGCTGATGAAGTAA
ATGTACGACTATATCAAAGGAATGTTAACAAAAATCACTGCAAAATATATTGTGGTAGAAACGCAAGGGGTAGGCTATAT
CTTGCAGGTTGCTAATCCCTACGCCTATTCAGGACAAGTCCAGCAAGAAGTGACTGTCTATACTCATCAAGTGATTCGAG
AAGATGCTCATTTGCTCTATGGATTTGCTACAGAAAATGAAAAATCCGTCTTTCTGAGTCTGATTTCAGTATCAGGTATT
GGTCCAACAACAGCTCTGGCTATTATTGCTGTTGATGATAATGATGGACTTGTTCGTGCTATTGAGCAGAAAAACATTAC
CTACCTGACCAAGTTTCCAAAGATTGGCAAGAAAACAGCCCAGCAGATGATTTTGGACTTGGAAGGCAAGTTTGTCATGA
GCGAAGAAGCGGGTCCTGTTCAACAAGTAGCACCATCCAGTGAAAATATCGCTCTTGATGAAGCTATGGAAGCCATGGAA
GCCCTTGGTTACCGCCCAGCCGAACTCAAGAAAATCAAGAAATTCTTTGAAGGCACCAATGACACCGCTGAAAACTACAT
CAAGTCAGCCCTTAAAATGCTGATGAAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvA | Streptococcus pneumoniae R6 |
75.127 |
100 |
0.755 |
| ruvA | Streptococcus pneumoniae D39 |
75.127 |
100 |
0.755 |
| ruvA | Streptococcus pneumoniae TIGR4 |
75.127 |
100 |
0.755 |
| ruvA | Bacillus subtilis subsp. subtilis str. 168 |
38.916 |
100 |
0.403 |