Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SSUD12_RS00400 Genome accession   NC_017621
Coordinates   69125..70276 (+) Length   383 a.a.
NCBI ID   WP_014637287.1    Uniprot ID   -
Organism   Streptococcus suis D12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 64125..75276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUD12_RS00380 (SSUD12_0062) hexB 64475..66412 (+) 1938 WP_014637283.1 DNA mismatch repair endonuclease MutL Machinery gene
  SSUD12_RS00385 (SSUD12_0063) ruvA 66442..67032 (+) 591 WP_014637284.1 Holliday junction branch migration protein RuvA Machinery gene
  SSUD12_RS00390 (SSUD12_0064) - 67286..67855 (+) 570 WP_014637285.1 DNA-3-methyladenine glycosylase I -
  SSUD12_RS00395 (SSUD12_0065) cinA 67892..69073 (+) 1182 WP_014637286.1 competence/damage-inducible protein A Machinery gene
  SSUD12_RS00400 (SSUD12_0066) recA 69125..70276 (+) 1152 WP_014637287.1 recombinase RecA Machinery gene
  SSUD12_RS10855 - 70507..71800 (-) 1294 Protein_62 IS4 family transposase -
  SSUD12_RS00415 (SSUD12_0069) spx 72028..72426 (+) 399 WP_002939362.1 transcriptional regulator Spx -
  SSUD12_RS00420 (SSUD12_0070) - 72526..72792 (+) 267 WP_002939360.1 IreB family regulatory phosphoprotein -
  SSUD12_RS00425 (SSUD12_0071) ruvX 72792..73211 (+) 420 WP_002939356.1 Holliday junction resolvase RuvX -
  SSUD12_RS00430 (SSUD12_0072) - 73223..73543 (+) 321 WP_002939343.1 DUF1292 domain-containing protein -
  SSUD12_RS00435 (SSUD12_0074) rpsJ 74628..74936 (+) 309 WP_002939332.1 30S ribosomal protein S10 -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 40890.62 Da        Isoelectric Point: 4.8910

>NTDB_id=40831 SSUD12_RS00400 WP_014637287.1 69125..70276(+) (recA) [Streptococcus suis D12]
MAKKPGKKLEDITKKFGDERKKALDDALKSIEKDFGKGAVMRLGERAEQKVQVMSSGSLSIDIALGAGGYPKGRIIEIYG
PESSGKTTVALHAVAQAQKDGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSV
AALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTVAIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDVR
GNTQIKGTGDKKDQNVGKETKVKIVKNKVAPPFKEAVVEIMYGEGISRTGELIEIGSNLGIIQKAGAWYSYNGEKIGQGS
ENAKKFLADNPAIFDEIDRKIRVHYGLIEADGVEEVATEETPVVAEEIQDVILDLDGGIELED

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=40831 SSUD12_RS00400 WP_014637287.1 69125..70276(+) (recA) [Streptococcus suis D12]
TTGGCTAAGAAACCAGGAAAAAAATTAGAAGATATTACAAAGAAATTTGGCGATGAGCGTAAAAAAGCGTTGGATGATGC
CCTAAAATCAATTGAAAAAGATTTTGGTAAGGGCGCTGTCATGCGTCTTGGTGAGCGTGCTGAGCAAAAAGTTCAAGTCA
TGAGCTCAGGTAGTTTGTCAATCGACATTGCGCTTGGAGCGGGTGGCTATCCGAAAGGTCGTATCATTGAGATTTACGGT
CCAGAGAGCTCAGGTAAGACAACTGTTGCTCTACACGCAGTAGCTCAAGCCCAGAAAGATGGTGGTATTGCTGCCTTTAT
CGATGCGGAGCATGCCTTGGATCCAGCCTATGCAGCAGCTCTTGGTGTCAATATTGATGAGTTACTCTTGTCCCAGCCAG
ACTCAGGGGAACAAGGTCTTGAAATTGCAGGCAAGCTGATAGACTCTGGTGCGGTTGACTTGGTTGTTGTTGACTCGGTT
GCAGCCCTTGTACCACGTGCAGAAATCGATGGCGATATTGGTGATAGTCATGTTGGCTTGCAGGCTCGTATGATGAGTCA
GGCTATGCGCAAACTCGGAGCATCCATCAACAAAACTAAGACAGTAGCTATTTTCATCAACCAATTACGTGAAAAAGTCG
GTGTCATGTTTGGTAACCCTGAAACAACACCTGGTGGTCGTGCGCTAAAATTCTATGCATCTGTCCGTATGGATGTTCGT
GGAAACACGCAAATCAAAGGAACAGGCGACAAGAAAGATCAAAACGTTGGTAAGGAAACCAAGGTGAAGATTGTGAAGAA
CAAGGTGGCGCCACCATTTAAAGAAGCTGTTGTTGAAATCATGTACGGTGAAGGAATTTCTCGCACAGGTGAATTGATTG
AGATTGGTAGCAACCTCGGCATCATCCAAAAAGCAGGTGCTTGGTATTCATATAATGGAGAAAAAATTGGCCAAGGTTCT
GAAAATGCTAAGAAATTCTTAGCAGATAATCCAGCAATCTTTGATGAAATTGACCGCAAGATACGTGTTCATTATGGCTT
GATTGAAGCAGATGGAGTTGAAGAGGTAGCGACCGAAGAAACTCCTGTTGTTGCGGAAGAAATCCAAGATGTTATCCTAG
ATCTTGATGGCGGTATTGAATTAGAAGATTAA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(22-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus thermophilus LMD-9

86.979

100

0.872
  recA Streptococcus thermophilus LMG 18311

85.788

100

0.867
  recA Streptococcus mutans UA159

85.938

100

0.862
  recA Streptococcus pyogenes NZ131

84.856

100

0.849
  recA Streptococcus pneumoniae Rx1

83.161

100

0.838
  recA Streptococcus pneumoniae R36A

83.161

100

0.838
  recA Streptococcus pneumoniae D39

83.161

100

0.838
  recA Streptococcus pneumoniae R6

83.161

100

0.838
  recA Streptococcus pneumoniae TIGR4

83.161

100

0.838
  recA Streptococcus mitis NCTC 12261

83.508

99.739

0.833
  recA Streptococcus mitis SK321

82.984

99.739

0.828
  recA Lactococcus lactis subsp. cremoris KW2

75.143

91.384

0.687
  recA Latilactobacillus sakei subsp. sakei 23K

63.585

93.211

0.593
  recA Staphylococcus aureus strain ATCC 12600

65.507

90.078

0.59
  recA Bacillus subtilis subsp. subtilis str. 168

68.085

85.901

0.585
  recA Acinetobacter baumannii D1279779

60.116

90.339

0.543
  recA Neisseria gonorrhoeae strain FA1090

62.236

86.423

0.538
  recA Neisseria gonorrhoeae MS11

62.236

86.423

0.538
  recA Acinetobacter nosocomialis M2

62.27

85.117

0.53
  recA Pseudomonas stutzeri DSM 10701

57.507

92.167

0.53
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.479

87.206

0.527
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.538

84.856

0.522
  recA Vibrio cholerae strain A1552

61.538

84.856

0.522
  recA Acinetobacter baylyi ADP1

61.538

84.856

0.522
  recA Glaesserella parasuis strain SC1401

60.923

84.856

0.517
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.681

84.334

0.512
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.61

86.423

0.507
  recA Ralstonia pseudosolanacearum GMI1000

60.568

82.768

0.501
  recA Helicobacter pylori 26695

57.879

86.162

0.499
  recA Helicobacter pylori strain NCTC11637

57.879

86.162

0.499

Multiple sequence alignment