Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   GPY47_RS08165 Genome accession   NZ_CP046806
Coordinates   3520..5775 (+) Length   751 a.a.
NCBI ID   WP_158156094.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain 2439-01     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..10775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY47_RS08150 lolD 899..1606 (+) 708 WP_005378457.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  GPY47_RS08155 lolE 1609..2853 (+) 1245 WP_158156092.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  GPY47_RS08160 - 3002..3511 (-) 510 WP_005387834.1 DUF2062 domain-containing protein -
  GPY47_RS08165 comEC 3520..5775 (+) 2256 WP_158156094.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  GPY47_RS08170 msbA 5807..7555 (+) 1749 WP_042522131.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  GPY47_RS08175 lpxK 7561..8568 (+) 1008 WP_158156096.1 tetraacyldisaccharide 4'-kinase -
  GPY47_RS08180 - 8549..8728 (+) 180 WP_005378451.1 Trm112 family protein -
  GPY47_RS08185 kdsB 8728..9483 (+) 756 WP_042522127.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 751 a.a.        Molecular weight: 84418.23 Da        Isoelectric Point: 7.5006

>NTDB_id=408081 GPY47_RS08165 WP_158156094.1 3520..5775(+) (comEC) [Vibrio alginolyticus strain 2439-01]
MTLSEKSWTLALFVASVISSAWWPTIPDWRWLLLGIITTGSIIKLRRGLISIGAIAGFTVVIVHGNVLESQRQALFQAGE
NITIIGKVDSPFTQISHGYEGIVAIEAVNSQTLLPFLKPKIRLITPFPLDVNSEFTTSISLKPITGLRNEAGFDAEKHAM
GKNIIARAVVNKDAKWIVRSNVSLRQSIIADVDDDVSSLHHFSLISALIFADRSWLSEEDWQALRDSGLLHLVSISGLHI
GMAFTFGLVVGGTVRYLLPQYQLLPSLHGLIFAVAYAWLADFSLPTTRAVSVCVVYVLLKYTLVHWTSWRVLLLAVSLQL
LVQPFASYSMSFWLSYLSVCAVLFAINLIRHQRGGWKARLKALLLTQLMLSALIVPVSGHFFSGFSLSSIAYNLVFIPWF
GFIVVPLMFLALFSSLFLEMIAKPLWHLVDWSLQPLSTSIQYAVGSWQPISMEMTMLVMVIVVCLIFQRFMSQYAWYLLL
GIVISIKFAAEYEPHWRIDVLDVGHGLAVVVEKDDKVLLYDTGKAWQSGSIAEQVVTPVLHQRGYESIDTLILSHSDNDH
AGGRFFIEDAFSPQRKLSSQFFIEYEPCTRGDQWKWQGLNMEVLWPPALVQRAYNPHSCVLRLTDPISNFSMLFTGDIEA
ISEWILLREPGKLQSDVMLVPHHGSKSSSNPRFIEAVSPSVAVASLAKNNRWGMPAENVVASYRKLGITWLDTGEGGQVS
FFIHRDNWHSETKRSDTFEPWYRQMLRKGVE

Nucleotide


Download         Length: 2256 bp        

>NTDB_id=408081 GPY47_RS08165 WP_158156094.1 3520..5775(+) (comEC) [Vibrio alginolyticus strain 2439-01]
ATGACTCTCTCAGAAAAAAGTTGGACCTTGGCGTTATTTGTAGCGAGCGTAATCTCGTCGGCTTGGTGGCCGACAATACC
AGATTGGCGTTGGTTGCTGCTGGGAATAATAACCACTGGCTCAATAATCAAATTACGTCGTGGCTTAATTAGCATAGGCG
CAATTGCGGGCTTTACGGTTGTCATCGTCCACGGCAATGTATTGGAGTCTCAGAGACAAGCCCTTTTTCAAGCAGGGGAG
AATATTACCATAATTGGTAAAGTTGACAGCCCTTTTACGCAAATAAGTCACGGTTATGAAGGTATTGTCGCGATAGAAGC
GGTAAATTCTCAAACTCTGTTACCTTTTCTTAAACCTAAAATCCGTCTTATTACGCCTTTTCCACTCGATGTTAACAGTG
AGTTTACGACATCCATCTCGTTAAAGCCGATTACAGGTCTACGCAACGAAGCTGGCTTTGATGCTGAAAAGCACGCGATG
GGTAAAAATATTATCGCCCGAGCGGTTGTTAACAAAGACGCTAAGTGGATTGTTCGTTCTAATGTATCTCTGCGTCAATC
CATTATTGCCGATGTCGATGATGATGTGTCTTCCCTTCATCATTTCTCGTTAATAAGTGCGTTAATTTTTGCTGACCGTT
CTTGGTTGTCTGAGGAAGATTGGCAAGCGCTCAGGGACAGTGGTTTACTGCATTTGGTCTCCATTTCTGGTTTACATATT
GGTATGGCGTTTACTTTTGGGCTAGTCGTGGGCGGTACCGTTCGTTATCTATTACCCCAATACCAGTTGTTGCCTAGCTT
ACATGGGCTGATCTTCGCTGTTGCCTACGCTTGGTTAGCGGATTTCTCTCTGCCTACTACGCGAGCAGTGTCGGTATGCG
TTGTTTACGTTCTCCTGAAGTATACTCTGGTGCACTGGACTTCTTGGCGAGTTCTTTTGCTTGCAGTATCTCTACAACTG
CTTGTCCAACCTTTTGCATCCTACAGTATGAGCTTTTGGTTATCGTACCTCTCCGTTTGTGCGGTATTGTTCGCAATTAA
TTTGATTCGACATCAAAGGGGAGGTTGGAAAGCGCGATTAAAAGCGTTATTGCTTACTCAATTGATGTTGAGCGCTTTAA
TCGTACCTGTTAGTGGCCATTTCTTCTCCGGTTTTAGTTTGTCCTCAATAGCCTACAACTTGGTATTTATTCCTTGGTTC
GGATTTATCGTTGTACCTTTGATGTTTCTAGCCCTGTTCTCATCTTTGTTTCTTGAAATGATAGCGAAGCCTCTGTGGCA
TTTGGTGGACTGGTCATTACAGCCATTGAGCACGTCAATACAGTACGCAGTAGGTTCTTGGCAACCCATTAGCATGGAAA
TGACAATGCTGGTTATGGTGATAGTGGTTTGCTTAATATTTCAACGGTTCATGTCTCAGTACGCGTGGTATTTGTTACTC
GGCATCGTTATTAGTATCAAGTTTGCAGCGGAGTATGAACCGCATTGGCGTATCGATGTATTAGATGTAGGTCATGGCCT
TGCAGTGGTTGTAGAAAAAGACGACAAGGTGTTGCTGTATGACACTGGTAAAGCATGGCAAAGCGGCAGTATCGCAGAGC
AGGTCGTCACTCCGGTTTTGCATCAACGAGGTTATGAAAGCATAGATACACTGATTCTAAGCCATTCCGATAATGATCAC
GCAGGCGGCCGCTTTTTCATTGAAGATGCCTTTTCTCCACAGCGTAAACTTAGTAGTCAATTCTTTATCGAATATGAGCC
TTGCACTAGAGGCGACCAATGGAAATGGCAAGGATTAAACATGGAAGTGCTCTGGCCTCCTGCACTTGTTCAACGTGCGT
ATAATCCGCACTCCTGTGTATTACGACTTACTGACCCTATTTCTAACTTTAGTATGCTTTTTACTGGTGATATTGAGGCC
ATTAGCGAGTGGATTTTGCTTAGAGAACCCGGAAAGTTACAAAGCGATGTGATGCTAGTCCCTCACCACGGGAGTAAAAG
TTCATCGAATCCTCGATTTATTGAGGCGGTGAGCCCGAGTGTGGCAGTTGCTTCTTTAGCAAAAAACAATCGATGGGGAA
TGCCAGCGGAAAATGTCGTTGCTTCATACCGAAAGCTTGGCATTACTTGGCTTGATACTGGTGAGGGTGGTCAGGTAAGC
TTCTTTATTCACCGTGATAATTGGCACTCAGAAACCAAACGTAGCGATACATTTGAGCCTTGGTATAGGCAGATGCTGCG
TAAGGGAGTAGAATGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(503-685)

Competence protein (Competence)

(208-465)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio parahaemolyticus RIMD 2210633

69.016

100

0.691
  comEC Vibrio campbellii strain DS40M4

65.691

100

0.658
  comEC Vibrio cholerae strain A1552

43.767

100

0.439

Multiple sequence alignment