Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   GPX92_RS16640 Genome accession   NZ_CP046802
Coordinates   2623726..2624313 (-) Length   195 a.a.
NCBI ID   WP_167514888.1    Uniprot ID   -
Organism   Vibrio cincinnatiensis strain 2070-81     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2618726..2629313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX92_RS16620 - 2618747..2620009 (-) 1263 WP_078924535.1 DUF945 family protein -
  GPX92_RS16625 - 2620272..2622206 (+) 1935 WP_078924534.1 ATP-binding protein -
  GPX92_RS16630 - 2622224..2622721 (+) 498 WP_158117383.1 response regulator -
  GPX92_RS16635 - 2623111..2623659 (+) 549 WP_078924532.1 hypothetical protein -
  GPX92_RS16640 tfoX 2623726..2624313 (-) 588 WP_167514888.1 TfoX/Sxy family DNA transformation protein Regulator
  GPX92_RS16645 - 2624687..2625607 (+) 921 WP_158117384.1 HDOD domain-containing protein -
  GPX92_RS16650 - 2625934..2626532 (+) 599 Protein_2323 lysine exporter LysO family protein -
  GPX92_RS16655 - 2626663..2627175 (+) 513 WP_154115702.1 hypothetical protein -
  GPX92_RS16660 panP 2627305..2628960 (+) 1656 WP_158117385.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22961.36 Da        Isoelectric Point: 7.4306

>NTDB_id=408073 GPX92_RS16640 WP_167514888.1 2623726..2624313(-) (tfoX) [Vibrio cincinnatiensis strain 2070-81]
MIEHTFFDYVIKFGAYQKRSMFGGIGLFQEDAMYALLTEDTIFIRGSEELDQQLMDLGCEKFRHVKKQTTATVNYYDITE
LFDKRHPDLESIIRRSIQYSIEQRNFQKSQASRRLRDLPNMQLTLERMVKKAGVDDVDTFIQLGAPEVFSKVRQVYGSDV
DVKLLWKFAGAIEGVHWKLLQEPKKRQLLEYCQHH

Nucleotide


Download         Length: 588 bp        

>NTDB_id=408073 GPX92_RS16640 WP_167514888.1 2623726..2624313(-) (tfoX) [Vibrio cincinnatiensis strain 2070-81]
ATGATTGAGCATACATTTTTTGATTATGTAATTAAGTTTGGCGCTTACCAAAAGCGTTCTATGTTTGGTGGTATTGGTTT
ATTTCAAGAAGATGCCATGTATGCATTATTAACGGAAGATACGATTTTCATTCGTGGTAGTGAGGAGTTGGATCAACAGC
TTATGGACTTAGGGTGCGAGAAGTTCCGCCATGTTAAGAAGCAAACGACCGCCACGGTGAATTATTATGACATTACGGAA
CTGTTTGATAAACGCCACCCTGACCTAGAGAGTATTATTCGGCGTTCTATTCAATATTCGATAGAACAACGTAATTTTCA
AAAATCTCAGGCTAGCCGCCGTTTACGTGATTTACCGAATATGCAGTTAACTCTGGAACGTATGGTGAAAAAAGCGGGAG
TCGATGATGTGGACACCTTTATCCAGCTTGGTGCTCCTGAAGTATTTAGCAAAGTGCGGCAAGTGTATGGTAGTGATGTT
GATGTAAAACTATTGTGGAAATTTGCTGGAGCCATTGAAGGTGTACACTGGAAGTTGTTGCAAGAACCTAAAAAACGGCA
GCTATTGGAGTATTGTCAGCACCATTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(10-98)

TfoX C-terminal domain (TfoX_C)

(112-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

79.897

99.487

0.795
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

79.897

99.487

0.795
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

79.897

99.487

0.795
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

79.897

99.487

0.795
  tfoX Vibrio cholerae strain A1552

79.897

99.487

0.795
  tfoX Vibrio campbellii strain DS40M4

66.321

98.974

0.656
  tfoX Vibrio parahaemolyticus RIMD 2210633

64.767

98.974

0.641
  tfoX Aliivibrio fischeri ES114

60.317

96.923

0.585

Multiple sequence alignment